Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0214
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 28 1.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 4.2
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 4.2
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 5.5
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.5
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 26 5.5
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 5.5
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 26 5.5
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M... 25 7.3
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 378 KTGENSAFKSRDAAPLRGPRPAHLKHAPNGHDARPSNRAM 497
+ G + +K P P P K+AP D RP RA+
Sbjct: 634 RRGNANIYKKASDRPWNDPAPRKKKNAPEVEDTRPLLRAI 673
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 152 PPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTSHPRKTS----GNEGPGAFPSQDLAPE 319
PP++ +A S + +P S S PT+ P TS E P P++ + +
Sbjct: 464 PPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKEKPARSPNETIDVD 523
Query: 320 AKEEVTG 340
+EE +G
Sbjct: 524 LEEEGSG 530
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 163 KVLPRDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRR 282
K +P+DE K SK++ K+ + ++A S + N +KR+
Sbjct: 192 KPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNGKKRK 231
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 80 FTISKSSCGTKCPADHRCRHYHSLPPIT 163
FTI K+ K P H C + LPP T
Sbjct: 718 FTIEKAGEPNKLPKAHTCFNRLDLPPYT 745
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 400 SSPATPPRSADPAPRISSM 456
SSPATPP S DP SS+
Sbjct: 25 SSPATPPESFDPQVFPSSL 43
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 137 HYHSLPPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTSHPRKTSGNEGP-GAFPSQDLA 313
HY L + + + ++ K+P++ + + +PT+H +GP F S +
Sbjct: 260 HYRQLQSVQQQQKQHQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIPSS 318
Query: 314 PEAKEEVTGTQFR 352
P+ + + QFR
Sbjct: 319 PKTEGAPSNAQFR 331
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 251 WWGADRNDLNFLGDWFLDSLPSFS 180
W+G R LNF G+W +D + FS
Sbjct: 165 WYGLAR--LNFKGEWSIDDVFQFS 186
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 307 PRPRSKGRSYRDTVSMRVLL*ME*RPVRTRHSSPATPPRSADPAPRISSMRPTDTTRD 480
P+PR + R ++D + + L + P SPA PP P P S+ P + D
Sbjct: 54 PQPR-RARRHKDAHAYDMSL-TDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESFSND 109
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Frame = +1
Query: 178 DEKDGKESKNQSPKKFRS-------FRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSY 336
D + E+K SP F + F + H+S ++ ++ WS+ +PR +
Sbjct: 426 DGQKNLEAKTVSPSNFCALEVCALQFVNGVHKSVVKHLDEKETWSIKYHFRKPRDQDNLL 485
Query: 337 RDTVSMRVLL*ME*RPVRTRHSSPATPPRS 426
R+ + +R ++ R S + PP S
Sbjct: 486 RNYIRLR-------DDIKRRESKISNPPES 508
>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 220 KFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSY 336
K R F +AP +S R W+ + RP K R +
Sbjct: 89 KKREFEAAPEKSYADFLRAYHSWNTFVNPDRPNLKKREF 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,399
Number of Sequences: 5004
Number of extensions: 47825
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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