Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0214
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 33 0.27
10_08_0870 - 21178136-21178534 30 1.4
03_06_0063 - 31391870-31392679 30 1.4
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 2.5
01_06_0049 - 25953811-25954131,25954223-25954903 29 2.5
12_02_0837 - 23554013-23554771 29 3.3
11_06_0253 - 21716164-21717144 29 3.3
10_06_0045 - 10048056-10048469 29 3.3
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671 29 3.3
01_06_0945 + 33217310-33217427,33218820-33219433 29 3.3
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 29 3.3
11_06_0610 - 25449085-25453284 29 4.3
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549 29 4.3
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 28 5.7
10_06_0046 - 10051197-10051610 28 5.7
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 28 5.7
10_08_0868 - 21171425-21171826 28 7.6
10_06_0049 - 10063273-10063665 28 7.6
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 28 7.6
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 28 7.6
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 28 7.6
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 175 RDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTR-PRPRSKGRSYRDTVS 351
R+ K S+++S + S + +S +++ + R S +R PR RS RS+
Sbjct: 182 REYDSAKRSRSRSRGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVKE 241
Query: 352 MRVLL*ME*RPVRTRHSSPATPPRSADPAPRISSMRP 462
PV+ R S + PP ++ P + +S P
Sbjct: 242 RSRSASQSRSPVKERSPSRSPPPATSPPREKSASKSP 278
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRCRH 139
A+V T+ A + N + ++ ++CG CP+D++C H
Sbjct: 90 AAVCLCTAIKANVLGIKLNLPIDLSLILNNCGKICPSDYQCVH 132
>03_06_0063 - 31391870-31392679
Length = 269
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 1/112 (0%)
Frame = +3
Query: 153 HQSQGAASR-RKRRQRXXXXXXXXXXXXXXXXXXXXHAKLQETKALERSPHKTSPQKQRK 329
H QG A R R RRQR H ++Q L S + + +
Sbjct: 43 HLPQGWAKRKRSRRQRSEEENLALCLLMLARGG---HHRVQAPPPLSASAPPPAGAEFKC 99
Query: 330 KLQGHSFDEGAALDGVKTGENSAFKSRDAAPLRGPRPAHLKHAPNGHDARPS 485
+ G SF AL G KT + AAP+ P P P+ D P+
Sbjct: 100 SVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPV-AALLPSAEDREPA 150
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.5 bits (63), Expect = 2.5
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = +1
Query: 175 RDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRPW---SVPLTRPRPRSKGRS-YRD 342
R + ++ +P+ RS R +T + R+R P P P RS GRS RD
Sbjct: 239 RRSPPARRERSPAPRS-RSPRRRSPVKTTSSHRERSPVRRNGSPRRSP-VRSIGRSPQRD 296
Query: 343 TVSMRVLL*ME*RPVRTRHSSPATPPRSADPAPRISSMRPTDTTRD 480
V +V + + R+R SPA S P+PR +R + R+
Sbjct: 297 RVKEQVRSPKQAQS-RSRSPSPARKRESRSPSPRSKRLRRAQSERE 341
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 104 GTKCPADHRCRHYHSLPPITRCCLET 181
G CP HRC HSL P R L +
Sbjct: 308 GDVCPYGHRCHFRHSLTPAERLLLRS 333
>12_02_0837 - 23554013-23554771
Length = 252
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 300 HKTSPQKQRKKLQGHSFDEGAALDGVKTGENSAFKSRDAAP 422
HK + K + K GH D AA K G+ A + AAP
Sbjct: 4 HKAAKSKSKSKSGGHGHDAAAASKKSKGGKAKANNAAAAAP 44
>11_06_0253 - 21716164-21717144
Length = 326
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 430 PRSGAASRDLNAEFSPVFTPSKAAPS--SKLCPCNFFLCF 317
P S +AS A P P+ A PS SKLC C F CF
Sbjct: 286 PASASASSSAPAADPPATAPAPATPSALSKLCGC--FPCF 323
>10_06_0045 - 10048056-10048469
Length = 137
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRC 133
A+V T+ A R N + +I + CG CP+D C
Sbjct: 97 AAVCLCTAVKANVLGIRVNLPVDLSIMLNKCGKTCPSDFTC 137
>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
Length = 340
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/91 (28%), Positives = 40/91 (43%)
Frame = +3
Query: 264 KLQETKALERSPHKTSPQKQRKKLQGHSFDEGAALDGVKTGENSAFKSRDAAPLRGPRPA 443
K Q+ +R + PQ+Q+++ G + AA T N AAPL+ +P
Sbjct: 174 KAQQPSEPKRRRKQQPPQQQKEEKAGEATMATAAAAAASTQGNHTSHHFPAAPLQ-QQPV 232
Query: 444 HLKHAPNGHDARPSNRAMTKYHGPNASXXRP 536
H+ + + ARPS+ A AS RP
Sbjct: 233 HVM---SYNVARPSSSAAYYAAARPASAARP 260
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 382 PVRTRHSSPATPPRSADPAPRISSMRP 462
P R SSP TPPR P P S++RP
Sbjct: 51 PSGARSSSPGTPPRGRRPPP--SNLRP 75
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 29.1 bits (62), Expect = 3.3
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 92 KSSCGTKC-PADHRCRHY---HSLPPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTSHP 259
+S GTK P HR H P R +T SP+ P S RSGRRPT
Sbjct: 21 RSKLGTKIGPHSHRAHEALARHKSPDFRRTG-PPSRTNTSPQP-PKDSTARSGRRPTEGR 78
Query: 260 RKTSGNEGPGAFPSQDL 310
T G PG P ++L
Sbjct: 79 SITEGRR-PGR-PEEEL 93
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = +3
Query: 294 SPHKTSPQKQRKKLQGHSFDEGAALDGVKTGENSAFKS--RDAAPLRGPRPAHLKHAPNG 467
SP K+SP ++ K HS ++ + T + KS A P P P+G
Sbjct: 769 SPPKSSPPEE-KSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSG 827
Query: 468 HDARPSNRAMTKYHGPNA--SXXRPLXXRSPXVKFHLNRP 581
H+ P + + P A S P SP + H++ P
Sbjct: 828 HEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSP 867
>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
Length = 792
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 11 ASVP---ASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRCRHYHSLPPITRCCLET 181
ASVP AST T G+R SLS T ++SS ++ H R HSLP R
Sbjct: 268 ASVPVNSASTRTPTGSRVPHHQPSLSVTGTRSSRRSR---GHDERSVHSLPERHR----- 319
Query: 182 KKTAKSPRTNP 214
++ A+ PR+ P
Sbjct: 320 ERRAERPRSPP 330
>12_01_0567 +
4641223-4641326,4641700-4642440,4642534-4642735,
4642830-4643285,4643382-4643774,4643868-4643870,
4645366-4645417,4645929-4646023
Length = 681
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 354 EGAALDGVKTGENSAFKSRDAAPLRGPRPAHLKHAPNGHDAR 479
E +A GV GE+ FK+ D + P P H K A +A+
Sbjct: 563 ELSAATGVLLGEDLQFKAEDKSDNNKPEPNHTKFATYMENAK 604
>10_06_0046 - 10051197-10051610
Length = 137
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRC 133
A+V T+ A R N + ++ + CG CP+D C
Sbjct: 97 AAVCLCTAVKANVLGIRVNLPVDLSLILNKCGKSCPSDFTC 137
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRCRHYHSLPP 157
A+ P + A+G ++TS S + SS + + RHYH PP
Sbjct: 69 AATPRTAHAASGGVMGGRDTSPSPSSYSSSSSSSSSSSPSVRHYHYYPP 117
>10_08_0868 - 21171425-21171826
Length = 133
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRC 133
A+V T+ A N + ++ ++CG CP+D++C
Sbjct: 92 AAVCLCTAIKANVLGLNLNIPIDLSLILNNCGKICPSDYQC 132
>10_06_0049 - 10063273-10063665
Length = 130
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRC 133
A+V T+ A R N + ++ + CG CP+D C
Sbjct: 90 AAVCLCTAVKANVLGIRVNLPVDLSLILNKCGKTCPSDFTC 130
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 27.9 bits (59), Expect = 7.6
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Frame = +1
Query: 175 RDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSYRDTVSM 354
R+++ GK + Q + R + + N++K S P+ RP G + +
Sbjct: 203 REDRSGKTTPVQRFEDRRPSEPQRPDNGSPNYQKETDGSSPVVRPVRDILGDN---APQL 259
Query: 355 RVLL*ME*RPVRTRHSS-PATPPRSADPAPRISSMRPTDTTR 477
RV + RT P PPR DP I RP D R
Sbjct: 260 RVGEPPKPNVARTIDPPRPIDPPRPIDPPRPIDPPRPIDPPR 301
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/86 (29%), Positives = 33/86 (38%)
Frame = +1
Query: 157 NHKVLPRDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSY 336
N K P EKD ++ + SP+ R S P + + N R P P PR R
Sbjct: 994 NEKGAPSAEKDVQQRREPSPR--RKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPI 1051
Query: 337 RDTVSMRVLL*ME*RPVRTRHSSPAT 414
R + + P R R SP T
Sbjct: 1052 RRRADASPVRRGD-TPPRRRPGSPVT 1076
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 8 FASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRCRHYHSLPPITR 166
+A+ P S R +NT F G CP HR R+Y + ITR
Sbjct: 343 YAAGPTMNSPIKLERLSPENTYEVFRRRVFGRGGDCPRQHRSRYYQKIFQITR 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,315,218
Number of Sequences: 37544
Number of extensions: 398497
Number of successful extensions: 1940
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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