Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0214
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       29   0.17 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   8.5  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   8.5  

>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 527 VKTTXXTIARGXVSPEPTGSNPGAIXMPS 613
           V  T  T+A G  +  PTG+NPG    P+
Sbjct: 413 VAPTTSTVAPGTTTTTPTGANPGTTQPPT 441


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +2

Query: 146 SLPPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTSHPRKTSGNEGPGAFPS 301
           S PP TR   E +   K   + PL++       P         + GP  FP+
Sbjct: 107 SQPPTTRFAPEPRAEVKFVPSVPLKTPPVRPLLPQQQQHPHQRDTGPALFPA 158


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 169 LPRDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSK 324
           +P   ++ +    +S  ++ S RS P   + +  R  RP S P +RP  + K
Sbjct: 250 IPPSRRNPRRRSPRSGGRWPSCRSPP---ARRRSRSTRPTSWPRSRPTSKPK 298


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,204
Number of Sequences: 2352
Number of extensions: 13182
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)