Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0214
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    26   0.37 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = +3

Query: 432 PRPAHLKHAPNGH-DARPSNRAMTKYHGPNASXXRPLXXRSPXVKFHLNRPGQIPEQXTC 608
           PRP H +       +A P N      + P      P   R P  +   NRP  IP+    
Sbjct: 81  PRPPHPRLRREAESEAEPGNNRPV--YIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138

Query: 609 LPGPXXXXPWEPGN 650
            P        EPGN
Sbjct: 139 HPRLRREPEAEPGN 152


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 585 DPVGSGETXPRAIVXXVVXTXKRSVRGI 502
           DP GSG    RA++   V T   ++ GI
Sbjct: 127 DPKGSGRMGYRALLYYTVTTILAAIVGI 154


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 412 TPPRSADPAPRISSMRPTDTTRD 480
           TPP+ A P P  SS  P     D
Sbjct: 337 TPPKPAPPPPPPSSSGPDSAKLD 359


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 504  YHGPNASXXRPLXXRSPXV 560
            Y GP+AS  RP+  R   V
Sbjct: 1354 YRGPSASGGRPVPERPERV 1372


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 382 PVRTRHSSPATPPRSADPAP 441
           P  + H SP  P R + P P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNP 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,948
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)