Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0213
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E1R6 Cluster: Chromosome undetermined scaffold_73, wh...    36   1.2  
UniRef50_Q7NBK2 Cluster: Predicted transposase; n=10; Mycoplasma...    33   4.7  
UniRef50_Q2NF76 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  

>UniRef50_A0E1R6 Cluster: Chromosome undetermined scaffold_73, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_73,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 216

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +3

Query: 276 REFLLLIKYYSTKSILKH*RNSQMKMNSIQLKQQLQQVKTAKELNXYHRLKL 431
           ++F  L+   +TK  LKH    Q+  NSI  KQ++QQ +++K LN Y  ++L
Sbjct: 2   QQFKRLLPLMNTKFHLKH----QVPYNSILNKQRIQQEQSSKYLNQYQNIRL 49


>UniRef50_Q7NBK2 Cluster: Predicted transposase; n=10;
           Mycoplasma|Rep: Predicted transposase - Mycoplasma
           gallisepticum
          Length = 348

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 317 HLEALKKLANEDEFYSIKTTITTGENSKGTE 409
           ++E +KK+ANED FY I+T IT   + +  E
Sbjct: 198 NIEKIKKVANEDGFYMIETNITNINSKEANE 228


>UniRef50_Q2NF76 Cluster: Putative uncharacterized protein; n=1;
           Methanosphaera stadtmanae DSM 3091|Rep: Putative
           uncharacterized protein - Methanosphaera stadtmanae
           (strain DSM 3091)
          Length = 304

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 290 IDQILFNEKHLEALKKLANEDEFYSIKTTITTGEN 394
           I+  +F+E+ L+ LKKL NED+    +  ITT +N
Sbjct: 157 IEDEIFDEELLQELKKLENEDDMMKQENKITTTDN 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,255,567
Number of Sequences: 1657284
Number of extensions: 6839523
Number of successful extensions: 17882
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17877
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)