Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0213
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    28   1.1  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    28   1.1  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.4  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 282 FLLLIKYYSTKSILKH*RNSQMKMNSIQLKQQLQQVKTAKELNXYHRL 425
           F LL  Y + ++ L H  N+  K+NS+ L QQL +     EL  + ++
Sbjct: 261 FALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKI 308


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 282 FLLLIKYYSTKSILKH*RNSQMKMNSIQLKQQLQQVKTAKELNXYHRL 425
           F LL  Y + ++ L H  N+  K+NS+ L QQL +     EL  + ++
Sbjct: 261 FALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKI 308


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 45  LKIQLVIKFTNVVLIYLNKLIIMXQFTLIXVVHLTALFASTACIDYDGFL---NMKLEHS 215
           L  +L   ++ V+L    KL  +  FT   V+ L A + +TAC    G+L     +   +
Sbjct: 115 LNYKLEWTYSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSRFHDN 174

Query: 216 LNCNDEKF 239
              N++KF
Sbjct: 175 RRWNEQKF 182


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 254 LTLKSIXTGVPIIDQILFNEKHLEALKKLANEDEFYS 364
           L +  I T   I+   L + KH+EA  +LA    FYS
Sbjct: 82  LQILGIATSYTILRSWLLSRKHIEAWIELAIRRMFYS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,728
Number of Sequences: 5004
Number of extensions: 31717
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)