Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0213
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    33   0.27 
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    30   1.9  
07_03_0708 - 20865786-20867153                                         29   4.4  

>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 66  KFTNVVLIYLNKLIIMXQFTLI--XVVHLTALFASTACIDYDGFLNMKLEHSL 218
           KFT VV+++  K +IM  + ++   V HL  +  S++ + Y+    ++  H L
Sbjct: 627 KFTAVVIVFKKKSVIMILYNMLSQNVFHLVEMVVSSSWLGYEALSQVEYTHML 679


>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 260 LKSIXTGVPIIDQILFNEKHL-----EALKKLANEDEFYSIKTTITTGENSKGTEYXSSV 424
           LKS   G   + ++ F    L     +A KKL +ED FYSI+      + ++     SS+
Sbjct: 102 LKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFYSIRLLSNVLDPARKDYVVSSI 161

Query: 425 KAQ 433
           KA+
Sbjct: 162 KAR 164


>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 314 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYXSSVKAQAFXENGSLMLSMH 472
           KH EA+++  +   F S   T   G+ +      SSV  QA  ENG+   +M+
Sbjct: 42  KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENGAGAYNMN 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,483
Number of Sequences: 37544
Number of extensions: 168915
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)