Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0213
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z93394-5|CAB61035.1| 447|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical pr... 27 9.1
U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine rece... 27 9.1
AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical... 27 9.1
AL117203-23|CAB61044.1| 447|Caenorhabditis elegans Hypothetical... 27 9.1
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 27 9.1
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 27 9.1
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 254 LTLKSIXTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTI 379
+T+KS+ T I+D F E H E +KK N ++F + T+
Sbjct: 62 MTVKSLDTA--IVDMEYFFETHYEYIKKKNNSEKFSFMVETL 101
>Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 299 ILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYXSSVKAQAFXENGSLM 460
++FN +L A+++ +D F + TT +SK SS+ QA S++
Sbjct: 573 VVFNRANLSAIEEEEQQDSFDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIV 626
>Z93394-5|CAB61035.1| 447|Caenorhabditis elegans Hypothetical
protein Y48E1C.1a protein.
Length = 447
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 299 ILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYXSSVKAQAFXENGSLM 460
++FN +L A+++ +D F + TT +SK SS+ QA S++
Sbjct: 254 VVFNRANLSAIEEEEQQDSFDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIV 307
>Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical
protein F44F4.5b protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 15 FXIIYGCVXYLKIQLVIKFTNVVLIYLNKLIIMXQFTLIXVVHLTALFASTACID 179
F + Y + LKI+ + + +L+Y + L + + V+ TAL S D
Sbjct: 40 FILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSFTLSD 94
>Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical
protein F44F4.5a protein.
Length = 336
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 15 FXIIYGCVXYLKIQLVIKFTNVVLIYLNKLIIMXQFTLIXVVHLTALFASTACID 179
F + Y + LKI+ + + +L+Y + L + + V+ TAL S D
Sbjct: 40 FILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSFTLSD 94
>U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 13 protein.
Length = 345
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = -1
Query: 130 IKVNXCIIIN--LFKYINTTLVNLITS 56
IK N +IIN LFKYI+T+++ L+T+
Sbjct: 88 IKSNCDLIINKTLFKYIHTSVIFLLTT 114
>AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 299 ILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYXSSVKAQAFXENGSLM 460
++FN +L A+++ +D F + TT +SK SS+ QA S++
Sbjct: 573 VVFNRANLSAIEEEEQQDSFDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIV 626
>AL117203-23|CAB61044.1| 447|Caenorhabditis elegans Hypothetical
protein Y48E1C.1a protein.
Length = 447
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 299 ILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYXSSVKAQAFXENGSLM 460
++FN +L A+++ +D F + TT +SK SS+ QA S++
Sbjct: 254 VVFNRANLSAIEEEEQQDSFDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIV 307
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 248 RKLTLK-SIXTGVPIIDQILFNEKHLEALKKLANEDEFYSI 367
R++T+K S T PI+ + N +HLE ++++ + D S+
Sbjct: 93 REITVKNSTKTASPILKDFVKNYEHLENVRRVIHRDNSRSV 133
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 248 RKLTLK-SIXTGVPIIDQILFNEKHLEALKKLANEDEFYSI 367
R++T+K S T PI+ + N +HLE ++++ + D S+
Sbjct: 85 REITVKNSTKTASPILKDFVKNYEHLENVRRVIHRDNSRSV 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,573
Number of Sequences: 27780
Number of extensions: 174371
Number of successful extensions: 484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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