Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0212
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 596  FLYSISGV*LITRVNFVCSSIVXFILAKVVLTSF 495
            F Y+I  +     V F C S +  I+A+++ T +
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIVAQILSTGY 980


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 596  FLYSISGV*LITRVNFVCSSIVXFILAKVVLTSF 495
            F Y+I  +     V F C S +  I+A+++ T +
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIVAQILSTGY 980


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 596  FLYSISGV*LITRVNFVCSSIVXFILAKVVLTSF 495
            F Y+I  +     V F C S +  I+A+++ T +
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIVAQILSTGY 980


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 596  FLYSISGV*LITRVNFVCSSIVXFILAKVVLTSF 495
            F Y+I  +     V F C S +  I+A+++ T +
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIVAQILSTGY 980


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 44  HLKHNIKCILPIIYISEAVNVNK*HYNLM*LFAN 145
           HL  +   ++P  YI+  +N++  ++N   +F N
Sbjct: 291 HLMWSKPDLIPNYYIAHFINIDPENHNKTEIFLN 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,372
Number of Sequences: 336
Number of extensions: 2559
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)