Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0210
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.0  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -1

Query: 70  SRRSF*INFSVIRIYVLL 17
           S++SF +NF++  +Y++L
Sbjct: 109 SKKSFRMNFAIFNLYMVL 126


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 357 SNKIRRQLIERRAH 316
           SN+  R LI+RR H
Sbjct: 266 SNRFTRHLIQRRTH 279


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 419 SPDEPCGTCF 390
           S D PC TCF
Sbjct: 688 SSDNPCTTCF 697


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 45  KFIQNDLRDFEYRPSICAASRLSQHERGPC 134
           + ++  + D    PS+ A SRL + + G C
Sbjct: 139 RLVKEGICDRSTAPSVSAISRLLRGKGGEC 168


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 580 VCTQ**RTSTVFRVSNEVIFHPRSGMVGVSY 488
           +CT     S + R+ NE+  H    M G+S+
Sbjct: 854 ICTLHHHLSKLIRLFNEIFGHGLLLMFGISF 884



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 516 LAQVWLEFLIGTYQRYIFVRKV 451
           +A VW+  +I  ++   F+RKV
Sbjct: 451 VATVWINSVINRWKFIEFIRKV 472


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 606 RAPPPNDKVYAPSSEERAPYSA 541
           R   P  K  AP++EE+ P +A
Sbjct: 213 RVKKPGAKQGAPTAEEKRPRTA 234


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 105 DWPRRLKACIQN 70
           DWP  ++ C+Q+
Sbjct: 961 DWPENVEGCMQH 972


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,823
Number of Sequences: 336
Number of extensions: 3919
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)