Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0210
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    29   0.45 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   1.4  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   1.8  
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    27   3.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   4.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   5.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   7.4  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.7  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 282 PARRLALLQSDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDM 130
           P   L   QSD + L Y IW HL  +  SK     E+L  S+  ++  I +
Sbjct: 360 PREMLKYAQSDTHYLLY-IWDHLRNELISKSAERKENLMQSVFNSSKQISL 409


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -1

Query: 436 VVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLRRVKSTSSGTKTGPP 260
           ++Y     T  V  V    ++     F++DS+P+ ++K ++   R++++T S  +   P
Sbjct: 181 IIYLRLEDTKEVRQVLTRCYDRYIKPFERDSSPSFKSKRSESSTRKIRNTRSSAQQESP 239


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = +2

Query: 257 WRRA--SLRAG*SRFHAPQ---------PVLCALRSMSWRRILLEYPVPVIEHGMRNRFH 403
           WR+A  S+++    FH P          P +CA     W    LE  +P+  H  +N  H
Sbjct: 30  WRKAYDSMKSCPITFHRPSQALALKGIGPTICAKLEKKWNAYCLENNIPISTHNEQNDSH 89


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 246 NPLDYKIWQHLEEKAC--SKPHPNLESLKTSLIKAAADIDMDLVRAAIDD 103
           N L Y I ++ E + C  S PHP+   +   +  A +   +D++R  +DD
Sbjct: 48  NSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDD 97


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 449 KNECSCVSKYSPDEPCGT 396
           + +C CV K+SPD  C +
Sbjct: 243 EKDCRCVRKFSPDGSCNS 260


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 379  FNNRHWVFQQDSAPAHRAKSTQDW 308
            FNN +W  ++++  AH A    +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 245 FKSDWRRASLRAG*SRFHAPQPVLCALRSMSWRRILLE 358
           +K  +   ++  G S FH+ + +LCA RS   R++LL+
Sbjct: 614 YKQSFSDVTIYCGTSMFHSHKFILCA-RSSFLRKLLLQ 650


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 373 NRHWVFQQDSAPAHRAKSTQDWLRRVKSTSSGTKTGPPPVRFESVR 236
           +R   +++D  P    +      R ++ +S G    PPP R  SVR
Sbjct: 65  SRERSYREDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERSVR 110


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 249 LNPLDYKIWQHLEEKACSKPHPNLESLK 166
           L   DY++W++LEEK   + HP   S +
Sbjct: 337 LKKYDYELWENLEEK---QIHPTYYSFR 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,148
Number of Sequences: 5004
Number of extensions: 65468
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)