Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0210
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283     31   1.1  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     30   1.4  
08_02_1604 - 28163318-28163347,28164594-28164911                       28   5.8  
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    28   7.6  

>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
          Length = 384

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -1

Query: 346 SAPAHRAKSTQDWLRRVKSTSSGTKTGPPPVRFESVRL 233
           S+PA +++S+  W RR+   ++  +T P P R E +++
Sbjct: 261 SSPARKSRSSTLWSRRLAHAAAEGRTSPQPPRDEQLQI 298


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 310  WLRRVKSTSSGTKTGPPPVRFESVRLQ 230
            W + +  TSS + T PPP   +S++LQ
Sbjct: 1009 WCQGLHGTSSSSSTSPPPENLQSLKLQ 1035


>08_02_1604 - 28163318-28163347,28164594-28164911
          Length = 115

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 177 PNWDEALSTPFPPS 218
           PNWD+ L+ P PPS
Sbjct: 53  PNWDDKLTLPLPPS 66


>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 520 HPRSGMVGVSYWDLPEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVF 356
           H RS  V   +    E+    KG K +   Y N +L  L +     MF+NR WVF
Sbjct: 196 HLRSREVSKGFQVYEEMR--RKGYKLDIFAY-NMLLDALAKAGMKIMFDNREWVF 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,990,442
Number of Sequences: 37544
Number of extensions: 453786
Number of successful extensions: 1369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)