Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0210
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6) 39 0.003
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 38 0.007
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 36 0.039
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 36 0.039
SB_18411| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10) 31 0.84
SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 30 1.5
SB_5503| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_52956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_9055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.4
SB_29477| Best HMM Match : Antistasin (HMM E-Value=9.2) 29 4.5
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 29 4.5
SB_3378| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16) 28 5.9
SB_43825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_36374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_30827| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7) 28 7.8
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_25469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_47031| Best HMM Match : Protamine_P1 (HMM E-Value=7) 28 7.8
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 28 7.8
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 28 7.8
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 28 7.8
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
DLNP D+ +W L++ +E LKT++ I + I ++ RR++ C+Q
Sbjct: 91 DLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQ 150
Query: 72 NHGGHFE 52
+GGH E
Sbjct: 151 RNGGHLE 157
>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 246 NPLDYKIWQHLEEKACSKPHPN-LESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQN 70
NP++ +W ++E+ P P + SLK+ KA ++ + + P+RLK I+
Sbjct: 199 NPIE-NLWSIIDEETYRDPQPRTMTSLKSRFKKAWRNVSLSTLSELSHSMPQRLKNVIKA 257
Query: 69 HGGHFE*TLV 40
GGH TL+
Sbjct: 258 KGGHANYTLI 267
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -1
Query: 376 NNRHWVFQQDSAPAHRAKSTQDWLRR 299
N R +F QD APAH AK++QDW ++
Sbjct: 162 NKRSMLFVQDGAPAHTAKASQDWCKK 187
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
DLNP D+ +W L++ +E LKT++ I + I ++ RR++ C+Q
Sbjct: 91 DLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQ 150
Query: 72 NHG 64
+G
Sbjct: 151 RNG 153
>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
Length = 267
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
DLNP D+ +W L++ +E LKT++ I + I ++ RR++ C+Q
Sbjct: 39 DLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQ 98
Query: 72 NHG 64
+G
Sbjct: 99 RNG 101
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
DLNP D+ +W L++ +E LKT++ I + I ++ RR++ C++
Sbjct: 315 DLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLE 374
Query: 72 NHG 64
+G
Sbjct: 375 RNG 377
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
DLNP D+ +W L++ +E LKT++ I + I ++ RR++ C++
Sbjct: 91 DLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLE 150
Query: 72 NH 67
+
Sbjct: 151 RN 152
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
DLNP D+ +W L++ +E LKT++ I + I ++ RR++ C++
Sbjct: 91 DLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLE 150
Query: 72 NH 67
+
Sbjct: 151 RN 152
>SB_18411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 32 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 83
Query: 267 PVFVPDEVDFTRRSQS 314
PV V D+ D R+ Q+
Sbjct: 84 PVSVVDKGDIRRKPQN 99
>SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10)
Length = 279
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 240 LDYKIWQHLEEKACSKPHPNLESLKTS 160
LD WQ LE+K C P +E+LK S
Sbjct: 225 LDLITWQELEKKVCGDPEITVEALKKS 251
>SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 457 KGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHR--AKSTQDWLRRVKST- 287
+G +A VY++ + N ++PV+HT + ++ +P A ST L R T
Sbjct: 564 RGALNSAAVYKDPITMNTIDPVTHTNSASSDVTYKNHGSPYDEVTATSTYQSLDRTPRTY 623
Query: 286 SSGTKTGPPPVRFESV 239
G P +E+V
Sbjct: 624 PDGRGQARGPREYEAV 639
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLK 85
DLNP D+ +W L++ +E LKT++ I + I ++ RR++
Sbjct: 700 DLNPPDFYLWGFLKDNVYQGNPQTIEELKTAITAKIRAIPKEECIKVIQNFARRVQ 755
>SB_5503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 61
Query: 267 PVFVPDEVDFTRRSQSC 317
PV E D R + C
Sbjct: 62 PVH-HIEADLANRLEDC 77
>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 276 RRLALLQSDLNPLDYKIWQHLEEKAC 199
R L L D+ P DY+ W+ +KAC
Sbjct: 524 RTLVLAYKDITPQDYQAWKSKYDKAC 549
>SB_52956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 61
Query: 267 PVFVPDEV 290
P+F+ +
Sbjct: 62 PLFITSSI 69
>SB_34478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 63 LRDFEYRPSICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLT 242
LR++ S+ A+S L Q +G C RRL S VTP + ++ S ++C
Sbjct: 70 LRNYWEGRSVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQV 124
Query: 243 DSNLTGGGPVF 275
DS G P+F
Sbjct: 125 DSR---GSPLF 132
>SB_9055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 61
Query: 267 PVFV 278
PV+V
Sbjct: 62 PVYV 65
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 560 SSLLGAYTLSFGGGALFYGKIF-HPKKNFRYFFR 658
S+L+G ++ G LF+GK+ HPK N Y F+
Sbjct: 1065 STLVGMMSIGSTFGRLFFGKVCDHPKVNRLYIFQ 1098
>SB_29477| Best HMM Match : Antistasin (HMM E-Value=9.2)
Length = 73
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDS 248
S+ A+S L Q +G C RRL S VTP + ++ PS ++C DS
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTPSAKLACLQVDS 58
>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
Length = 865
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 382 MFNNRHWVFQQDSAPAHRAKSTQDWLRRVKST 287
+F R VF + +P + AKS + L +KST
Sbjct: 357 IFGKRRGVFSSEKSPFYAAKSEPELLNEIKST 388
>SB_3378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/50 (20%), Positives = 25/50 (50%)
Frame = -1
Query: 457 KGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDW 308
+G +A +Y++ + N ++PV+HT + ++ +P +T +
Sbjct: 4 RGALKSAALYEDPITMNTIDPVTHTNSASSDVTYKNHGSPYDEVTATSTY 53
>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
Length = 535
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 434 CVSKYSPDEPCGTCFS 387
C K+SPDE C TC S
Sbjct: 237 CAVKHSPDEICATCIS 252
>SB_43825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS + GG
Sbjct: 24 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSRGSPGG 78
>SB_40300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 61
Query: 267 PVFVP 281
P+ +P
Sbjct: 62 PMTIP 66
>SB_36374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS + GG
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSRGSPGG 64
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 32 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 83
Query: 267 PVF 275
P+F
Sbjct: 84 PIF 86
>SB_30827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -1
Query: 457 KGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKST---QDWLRRVKST 287
+G +A + ++ + N ++PV+HT + + +P+ +T Q R ++++
Sbjct: 4 RGALNSAAIDEDPITMNTIDPVTHTTSASSDVTNENHGSPSDDVTATSTYQSLDRTIRTS 63
Query: 286 SSGTKTGPPPVRFESV 239
G P +E+V
Sbjct: 64 PDGRGRARGPCEYEAV 79
>SB_11209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 61
Query: 267 PVFVPDEVDFTRR 305
P FVP + F R
Sbjct: 62 P-FVPFDYVFCGR 73
>SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)
Length = 141
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 32 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 83
Query: 267 PVFVPDE 287
P F PD+
Sbjct: 84 P-FPPDD 89
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 27.9 bits (59), Expect = 7.8
Identities = 26/79 (32%), Positives = 37/79 (46%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS G
Sbjct: 798 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSR---GS 849
Query: 267 PVFVPDEVDFTRRSQSCVL 323
P V F+ R+ +CVL
Sbjct: 850 PNCV-----FSIRNSACVL 863
>SB_25469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +3
Query: 54 QNDLRDFEYRPSICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISC 233
+N LR+ S+ A+S L Q +G C RRL S VTP + ++ S ++C
Sbjct: 18 ENLLRNCWEGRSVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLAC 72
Query: 234 NLTDSNLTGGGPVFV 278
DS G P+ V
Sbjct: 73 LQVDSR---GSPLIV 84
>SB_47031| Best HMM Match : Protamine_P1 (HMM E-Value=7)
Length = 128
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 87 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLTGGG 266
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS + G
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSRGSPQG 64
Query: 267 P 269
P
Sbjct: 65 P 65
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 529 PRWTRGIRCSFFTTGCIHLIIWW--WSSLLRENFSSEKEFPIF 651
P W + C F TGC+ L+ ++ + LR+ EF F
Sbjct: 118 PVWLMTMACWIFVTGCLSLVNYYSPYGHRLRDTEGDGDEFSFF 160
>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3
Query: 54 QNDLRDFEYRPSICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISC 233
+N LR+ S+ A+S L Q +G C RRL S VTP + ++ S ++C
Sbjct: 110 RNTLRNCWEGRSVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLAC 164
Query: 234 NLTDSNLTGGGPV 272
DS + PV
Sbjct: 165 LQVDSRGSPFRPV 177
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 427 DTQLHSFLHLSHKNVPLVSPNKKLQPY 507
DT++ H +H N P+++P L PY
Sbjct: 443 DTRIRIKKHFAHNNPPVLTPATNLYPY 469
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 559 TSTVFRVSNEVIFHPRSGMVGVSYWDLPEVHFCEKGVKTNAV 434
T+ + + PR ++ WD+PE+ C K + NA+
Sbjct: 484 TTPITATQTPTVLIPRGRFTALAMWDIPEMESCVK-ISMNAL 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,316,103
Number of Sequences: 59808
Number of extensions: 489206
Number of successful extensions: 1776
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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