Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0210
         (664 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52077-1|AAC52010.1|  343|Homo sapiens mariner transposase protein.    31   3.7  
BC042045-1|AAH42045.1|  890|Homo sapiens GARNL1 protein protein.       31   3.7  
AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1 ...    31   3.7  
AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1 ...    31   3.7  
AK126975-1|BAC86772.1|  702|Homo sapiens protein ( Homo sapiens ...    31   3.7  

>U52077-1|AAC52010.1|  343|Homo sapiens mariner transposase protein.
          Length = 343

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = -2

Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
           DL+P DY  ++HL+     K   N +  + +  +       D     I+    R + C+ 
Sbjct: 277 DLSPTDYHFFKHLDNFLQGKRFHNQQDAENAFQEFVESRSTDFYATGINKLISRWQKCVD 336

Query: 72  NHGGHFE 52
            +G +F+
Sbjct: 337 CNGSYFD 343


>BC042045-1|AAH42045.1|  890|Homo sapiens GARNL1 protein protein.
          Length = 890

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 255 SDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACI 76
           SDL  +DY  + HLE     +P  + +S ++S ++   ++   +    I    R +   +
Sbjct: 308 SDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQHGLISIAARTVITHL 367

Query: 75  QNHGGHF 55
            NH GH+
Sbjct: 368 VNHLGHY 374


>AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1
            isoform 2 protein.
          Length = 2083

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 255  SDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACI 76
            SDL  +DY  + HLE     +P  + +S ++S ++   ++   +    I    R +   +
Sbjct: 1454 SDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQHGLISIAARTVITHL 1513

Query: 75   QNHGGHF 55
             NH GH+
Sbjct: 1514 VNHLGHY 1520


>AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1
            isoform 1 protein.
          Length = 2036

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 255  SDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACI 76
            SDL  +DY  + HLE     +P  + +S ++S ++   ++   +    I    R +   +
Sbjct: 1454 SDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQHGLISIAARTVITHL 1513

Query: 75   QNHGGHF 55
             NH GH+
Sbjct: 1514 VNHLGHY 1520


>AK126975-1|BAC86772.1|  702|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45028 fis, clone BRAWH3018063, highly  similar
           to Rattus norvegicus tuberin-like protein 1 (Tulip1). ).
          Length = 702

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 255 SDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACI 76
           SDL  +DY  + HLE     +P  + +S ++S ++   ++   +    I    R +   +
Sbjct: 72  SDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQHGLISIAARTVITHL 131

Query: 75  QNHGGHF 55
            NH GH+
Sbjct: 132 VNHLGHY 138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,568,217
Number of Sequences: 237096
Number of extensions: 2330458
Number of successful extensions: 6598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6595
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)