Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0210
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 79 4e-15
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 33 0.14
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 33 0.14
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 33 0.14
U64598-13|AAL65779.1| 388|Caenorhabditis elegans Paf-acetylhydr... 29 2.2
AF386745-1|AAL57290.1| 388|Caenorhabditis elegans PAF-2 protein. 29 2.2
Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 29 3.9
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 29 3.9
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 29 3.9
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 29 3.9
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 3.9
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 3.9
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 29 3.9
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 3.9
AF038612-2|AAB92044.1| 507|Caenorhabditis elegans Hypothetical ... 28 6.8
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 27 9.0
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 27 9.0
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 27 9.0
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 27 9.0
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 27 9.0
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 27 9.0
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 27 9.0
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = -2
Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKA 82
DLNP+DY +W LE KACSKPH N++SLK SL KA ++D++ +RA +D +PRRL+A
Sbjct: 343 DLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFPRRLEA 399
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -1
Query: 466 FCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDW 308
F +G+K N Y + + T L+ P F W FQQD APAH+ K+ Q W
Sbjct: 272 FVPQGIKVNGNNYLDMLKTELM-PWVKKHFKKTKWTFQQDGAPAHKHKNVQAW 323
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 141 DIDMDLVRAAIDDWPRRLKACIQNHGGHFE 52
++++ +RA +D +P+R++ CI+ G FE
Sbjct: 419 ELEIPYLRATVDAFPKRVRVCIEADGDIFE 448
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -1
Query: 448 KTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLRRVK 293
K N+ YQN + L + + H ++ + + FQQD+A H + ST+D+ + K
Sbjct: 200 KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNATIHVSNSTRDYFKLKK 249
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -1
Query: 448 KTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLRRVK 293
K N+ YQN + L + + H ++ + + FQQD+A H + ST+D+ + K
Sbjct: 200 KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNATIHVSNSTRDYFKLKK 249
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -1
Query: 448 KTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLRRVK 293
K N+ YQN + L + + H ++ + + FQQD+A H + ST+D+ + K
Sbjct: 330 KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNATIHVSNSTRDYFKLKK 379
>U64598-13|AAL65779.1| 388|Caenorhabditis elegans
Paf-acetylhydrolase protein 2,isoform a protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Frame = +2
Query: 350 LLEYPVPV--IEHGMRNRFHKVRQDCI--LIHNCIRFYTFLTKMYLW*VPIR---NSNHT 508
L+E P+ + IE +N F K+R + + C++ L ++ L VP + +++
Sbjct: 161 LVEQPIKIKLIEKNEKNEF-KIRNQQVGKRVTECVKALNVLEQLNLGTVPEKVLIGNDYN 219
Query: 509 *ARMENDLV-------GHAEYGARSSLLGAYTLSFGGGALFYGKIF 625
A+ +N LV GH+ GA S AYT F +F G ++
Sbjct: 220 WAQFKNKLVMSSASVIGHSFGGATSLASSAYTTDFQKAIVFDGWMY 265
>AF386745-1|AAL57290.1| 388|Caenorhabditis elegans PAF-2 protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Frame = +2
Query: 350 LLEYPVPV--IEHGMRNRFHKVRQDCI--LIHNCIRFYTFLTKMYLW*VPIR---NSNHT 508
L+E P+ + IE +N F K+R + + C++ L ++ L VP + +++
Sbjct: 161 LVEQPIKIKLIEKNEKNEF-KIRNQQVGKRVTECVKALNVLEQLNLGTVPEKVLIGNDYN 219
Query: 509 *ARMENDLV-------GHAEYGARSSLLGAYTLSFGGGALFYGKIF 625
A+ +N LV GH+ GA S AYT F +F G ++
Sbjct: 220 WAQFKNKLVMSSASVIGHSFGGATSLASSAYTTDFQKAIVFDGWMY 265
>Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical
protein F26E4.5 protein.
Length = 474
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 522 KMTSLDTRNTVLVLH-YWVHTPYHLVVELSSTGKFFIRK 635
+ T L R V+VL +W +HLVVE ++ G +++++
Sbjct: 114 RKTELTKRGEVVVLSVFWDEGVHHLVVEKANNGLYYLKE 152
>Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical protein
ZK1151.1i protein.
Length = 1497
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 929 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 978
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical
protein ZK1151.1h protein.
Length = 3424
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical
protein ZK1151.1a protein.
Length = 3436
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical
protein ZK1151.1f protein.
Length = 3322
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical
protein ZK1151.1e protein.
Length = 3323
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 689 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 738
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical
protein ZK1151.1d protein.
Length = 3405
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 771 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 820
>Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical protein
ZK1151.1i protein.
Length = 1497
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 929 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 978
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical
protein ZK1151.1h protein.
Length = 3424
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical
protein ZK1151.1a protein.
Length = 3436
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical
protein ZK1151.1f protein.
Length = 3322
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical
protein ZK1151.1e protein.
Length = 3323
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 689 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 738
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical
protein ZK1151.1d protein.
Length = 3405
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 771 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 820
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 RMS*VTPNWDEALSTPFPPSVAISCNLTDSNLT--GGGPVFVPDEVDFTR 302
R + ++P W P P V C+ +D N+T G V++ D D +
Sbjct: 802 RCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDDVYLLDNSDLIK 851
>AF038612-2|AAB92044.1| 507|Caenorhabditis elegans Hypothetical
protein F13B6.2 protein.
Length = 507
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 180 LESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 52
+ SLK +L A ++D++ +RA +D P+ L G+F+
Sbjct: 1 MNSLKIALTAAWDNLDVNYLRAVVDSHPKGLWPLSNQKEGYFK 43
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical
protein W07E11.1 protein.
Length = 2207
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 381 CSITGTGYSNKIR---RQLIERRAHKTGCGA*N 292
CSI GT S+KI R ++ER AH+ CG N
Sbjct: 65 CSIKGTT-SSKIMSDARTMLERMAHRGACGCDN 96
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical
protein W07E11.1 protein.
Length = 2207
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 381 CSITGTGYSNKIR---RQLIERRAHKTGCGA*N 292
CSI GT S+KI R ++ER AH+ CG N
Sbjct: 65 CSIKGTT-SSKIMSDARTMLERMAHRGACGCDN 96
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQR 193
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 211 RGFVFQQDNDPKHTSLHVRSWFQR 234
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQR 263
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQR 263
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQR 193
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQR 193
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 370 RHWVFQQDSAPAHRAKSTQDWLRR 299
R +VFQQD+ P H + + W +R
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQR 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,216
Number of Sequences: 27780
Number of extensions: 368788
Number of successful extensions: 1177
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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