Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0210
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    30   0.017
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   6.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.0  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 252 DLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQ 73
           DL P DY +++ L+     K   N + +K+ LI+  A+ +       I   P R +  I 
Sbjct: 275 DLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVID 334

Query: 72  NHGGH 58
            +G H
Sbjct: 335 QNGQH 339


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 556 STVFRVSNEVIFHPRSGMVGVSYWDLPEVHF--CEKGVK 446
           +TV    N+VI HP+  ++    W + ++     EK +K
Sbjct: 230 ATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIK 268


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 123 VRAAIDDWPRRLK 85
           + AA+D+WPR L+
Sbjct: 400 ITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 123 VRAAIDDWPRRLK 85
           + AA+D+WPR L+
Sbjct: 453 ITAAVDEWPRLLR 465


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 412 TNLVEPVSHTMFNNRHWVF 356
           + ++ PVS  +FN  +W+F
Sbjct: 468 SRIIFPVSFMLFNAIYWIF 486


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 381 CSITGTGYSNKIRRQLIERRAHKTGCG 301
           CS+T + +  K+R  L + R   T  G
Sbjct: 349 CSVTNSPHQKKLRFHLAKERKASTTLG 375


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 495 TPTIPERGWKMTSLDTRNTV 554
           TP +P R     S+D+ NT+
Sbjct: 531 TPVLPSRFQSHPSIDSANTI 550


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 592 WWWSSLLRENF 624
           W W++LLR NF
Sbjct: 26  WNWNTLLRPNF 36


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 592 WWWSSLLRENF 624
           W W++LLR NF
Sbjct: 70  WNWNTLLRPNF 80


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 592 WWWSSLLRENF 624
           W W++LLR NF
Sbjct: 70  WNWNTLLRPNF 80


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 592 WWWSSLLRENF 624
           W W++LLR NF
Sbjct: 70  WNWNTLLRPNF 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,678
Number of Sequences: 438
Number of extensions: 4842
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)