Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0203
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   5.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.4  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   9.7  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 349 VLDSF*TFLENRENILIELIYVLAITCLRQPTYVYE 242
           ++D    FL   + + +E  + L++  LR P++VY+
Sbjct: 746 LIDGLPKFLNTSKRVSLENFHRLSVEDLRSPSFVYK 781


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -3

Query: 376  HLLK-ILSDVVLDSF*TFLENRENILIELIYVLAITCLRQPTYVYEISTRQQAMKAR*HI 200
            HL+K +L+ ++++      ENR + L+   Y  ++T + +PT+   +   +  ++ R H+
Sbjct: 1399 HLIKLVLASIIVNV--PSSENRLSTLMANFYAFSLTVMMKPTHPLFVGINRYYLQ-RQHV 1455

Query: 199  CVEIVP 182
             V  +P
Sbjct: 1456 DVTDIP 1461


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 455 HLLVQRNNFKLKVNPES 505
           HLL   NNF LK NPE+
Sbjct: 947 HLLDPDNNFNLKGNPEN 963


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 61  PNRALYTFLKYGPPXXKXPN 2
           P RALY   K G P  K PN
Sbjct: 514 PIRALYLIAKNGTPTLKKPN 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,863
Number of Sequences: 5004
Number of extensions: 48018
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)