Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0203
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      97   1e-22
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          80   2e-17
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      31   0.007
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.85 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 97.1 bits (231), Expect = 1e-22
 Identities = 42/79 (53%), Positives = 59/79 (74%)
 Frame = +1

Query: 256 LAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNX 435
           LA +GR L+AH++VLS CSPYF+E+ K  P +HP++ L+DV+ S L  L++F+Y GEVN 
Sbjct: 36  LACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNV 95

Query: 436 KQEELASFISTAEQLQVKG 492
            Q  L+SF+ TAE L+V G
Sbjct: 96  HQRSLSSFLKTAEVLRVSG 114



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVS 256
           M   + F L WNN+ +++++ F  L    D VDV+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVT 35


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 79.8 bits (188), Expect = 2e-17
 Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
 Frame = +1

Query: 256 LAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPIVFL-KDVSHSALRDLLQFMYQGEVN 432
           LA     L+AHK+VLS CS YFQ++   NP +HP + + +DV  + L+ +++F+Y+GE++
Sbjct: 40  LACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEID 99

Query: 433 XKQEELASFISTAEQLQVKG 492
             Q EL S + TA+QL++KG
Sbjct: 100 VSQAELQSLLKTADQLKIKG 119



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 164 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVS 256
           + + L WNN+ +NM++ FH LL     VDV+
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVT 39


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVS 256
           M   + F L WNN+ +++++ F  L    D VDV+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVT 35


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 452 HHLLVQRNNFKLKVNPESKEESPRHPN 532
           H +L Q++ + +  NP+ ++    HPN
Sbjct: 79  HQVLYQQSPYLMYENPDEEKRYQEHPN 105


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 128 VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDV 253
           V R +VA++ +   F +CW  FHA      +   S+    DV
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDV 321


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 27  PYFRNV*SALLGTLSYIFFKCFSYRNYKYKA*DRFH 134
           PYF N   + +  L++ F     YRN   K   R H
Sbjct: 76  PYFLNAKVSEIAALNHKFSSVTLYRNKTVKYSARMH 111


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 129 FHVESSLSWRRTNNFHY 179
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 491 PLT*SCSAVLINDANSSCLXLTSP 420
           P+T + S ++ N  NS+C    SP
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,685
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)