Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0200
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.56 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   6.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   6.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.9  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 379 SSSLGDCYNNYAIAYNCKY-DDKKKSHQVFAGSSLE 483
           ++S  +CYNNY    N  Y      SH  F G+ LE
Sbjct: 246 TNSTTNCYNNYPYYSNMDYLSSSTMSHSQF-GNGLE 280


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 553 ESISLKCSLMNYRQQFSVAFKFLFLERIQRTLDETFSCHRICS 425
           ++I + C ++   Q   +   ++FL  I    D  + CH  CS
Sbjct: 613 QTIFIICVIVQSEQIAWLHLLYIFLVGIMYAADVFYICHVCCS 655


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 400 YNNYAIAYNCKY 435
           YNNY   ++C+Y
Sbjct: 224 YNNYQEGFSCQY 235


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 400 YNNYAIAYNCKY 435
           YNNY   ++C+Y
Sbjct: 244 YNNYQEGFSCQY 255


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 450 VSSSVRWILSRNKNL 494
           VS   RW L+RN NL
Sbjct: 268 VSKQKRWELARNLNL 282


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 442 CHRICSCK 419
           CHR+ SCK
Sbjct: 140 CHRVLSCK 147


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,609
Number of Sequences: 336
Number of extensions: 2328
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)