Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0200
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   5.6  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   7.4  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 356 GEISRDGSVQVLATAIITTPSLTTANTMTRKSLIKCS 466
           G I  DG   ++A+ + TTP  T A      SL KC+
Sbjct: 382 GGILGDGLASLIASLMTTTPLTTFAQNNGVISLTKCA 418


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 213 SAEYKLEGDVVKVKTCISSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 365
           SA  K+  D +  K   S  + R + K  PSSP+TPI   P+  + +LSL++Y
Sbjct: 518 SALAKIGHDALNRKNHASLPSRRIVYKP-PSSPSTPISMNPRP-KGILSLQQY 568


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +2

Query: 254 DVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATAIITTPSLTTAN 433
           D+H +D        T K + +   A+KLT       +  +G V V +  ++ +  +    
Sbjct: 100 DLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLLEEGEVAVSSPILLDSKDVIMGV 159

Query: 434 TMTRKSLIK 460
           T + K+L++
Sbjct: 160 TKSSKNLVE 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,961
Number of Sequences: 5004
Number of extensions: 42765
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)