Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0200
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    39   0.003
02_04_0592 - 24171698-24172285                                         33   0.27 
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    31   0.62 
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780...    29   2.5  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 114 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKV 251
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKV 48


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 111 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD 239
           E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  D
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPD 56


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 239
           V NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>05_07_0339 -
           29375424-29377166,29377272-29377441,29377888-29378030,
           29378363-29378478,29378576-29378814,29378909-29379110,
           29379212-29379430,29379657-29379724,29379806-29379812,
           29380404-29380616
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 287 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATAIITTPSLTTANTMT 442
           IEG  ++ +  N    L V   F E   + S Q+LA    T   LT  N  T
Sbjct: 256 IEGATRVVEATNDDKDLRVYLSFAEPVMNSSSQILAALTATDAILTPTNRST 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,912
Number of Sequences: 37544
Number of extensions: 266930
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)