Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0200
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 32 0.42
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 29 3.0
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 29 3.0
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 29 3.0
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 3.0
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 3.0
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 3.0
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 3.0
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 29 3.0
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 29 3.0
U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical pr... 28 6.8
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +2
Query: 266 IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATAIITTPSLTTANTMTR 445
+DG+ +E TAK+T D + L VTF+ G+ + + + T T
Sbjct: 16 VDGIN--VECTAKVTSDGVERRSLRVTFENGDTIFVTHNLISSWTFVNTQETTDTMVSMV 73
Query: 446 KSLIKCSLDPL*KQELEGDAKLLSI 520
+ L KC P+ + +G ++ S+
Sbjct: 74 RYLNKCKGSPIVVHDFDGISRSASL 98
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 240 VVKVKTCISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 371
++ + C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 25 LISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 240 VVKVKTCISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 371
++ + C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 25 LISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 240 VVKVKTCISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 371
++ + C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 25 LISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 233
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 233
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 233
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 233
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 240 VVKVKTCISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 371
++ + C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 67 LISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 110
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 240 VVKVKTCISSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYHA 371
++ + C SS+ R +SP+TP+ P+ SL SL +H+
Sbjct: 25 LISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSGHHS 68
>U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical
protein ZC449.1 protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 171 SKFPNESEKNGKCSSAEYKLEGDVVKVKT 257
S+ + S NG S +YK+ G+ V+V+T
Sbjct: 415 SESESSSPSNGGWSECDYKINGETVRVRT 443
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 156 IWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKTCISSTASRSI*KGRPSSPTTPIKP 329
+W++ F +ES + + + EYK GD+ K+ SST + P P P P
Sbjct: 399 VWFKAGYFTDESLRVQRGENGEYKTIGDLKKLHG--SSTPFEYLEDIEPPRPILPSIP 454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,712
Number of Sequences: 27780
Number of extensions: 239962
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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