Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0200
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.65 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 362 ISRDGSVQVLATAIITTPSLTTANTMTRKSLIKCSLDP 475
           +S DG ++V+  + I  PS   A    + S + CS  P
Sbjct: 359 MSEDGMIEVIPLSAIPEPSKNPAMGHWQMSCVACSPPP 396


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 186 RWEISRFHTRC--LGKLSS*SCSPVSARGRCLRE*LQQS 76
           RW++ +FH  C  +G  S  S   V A GR   E  Q++
Sbjct: 186 RWDLGKFHRVCTQIGS-SMKSVGEVMAIGRKFEEAFQKA 223


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 377 SVQVLATAIITTPSLTTANTMTRKSLIKCS 466
           +V VLA AI + P L      T + + KCS
Sbjct: 162 AVWVLAGAITSPPLLGCFPRATNRDIKKCS 191


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 251 DLHHVTFQFVFS*RAF 204
           D  HVTF+  F  RAF
Sbjct: 172 DTVHVTFKLTFDNRAF 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,420
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)