Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0200
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    38   0.005
At3g22421.1 68416.m02831 F-box family protein contains Pfam PF00...    31   0.69 
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    28   6.4  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 111 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD 239
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPD 49


>At3g22421.1 68416.m02831 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 367 TRWIS----SSLGDCYNNYAIAYNCKYDDKKKSHQV 462
           TRWI     S + +CY  Y   Y   Y++K +SH++
Sbjct: 131 TRWIEPRYFSRIQNCYGRYMYVYALGYNNKSRSHKI 166


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 123 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 239
           V NFN++ + G WY I+   N +     C   E+  EGD
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGD 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,617
Number of Sequences: 28952
Number of extensions: 224710
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)