Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0199
(663 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 152 8e-36
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 95 1e-18
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 82 1e-14
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 74 3e-12
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 73 5e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 69 8e-11
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 66 9e-10
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 66 9e-10
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 62 9e-09
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 6e-08
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 59 1e-07
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 2e-07
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 54 3e-06
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 1e-05
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 51 3e-05
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 51 3e-05
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 50 4e-05
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 50 5e-05
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 47 5e-04
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 47 5e-04
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 42 0.010
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 40 0.053
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.1
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 2.0
UniRef50_A0NE24 Cluster: ENSANGP00000018828; n=4; Culicidae|Rep:... 34 2.7
UniRef50_Q96XL2 Cluster: Putative uncharacterized protein ST2504... 33 8.1
UniRef50_Q59683 Cluster: Uroporphyrinogen-III synthase; n=1; Pro... 33 8.1
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 152 bits (368), Expect = 8e-36
Identities = 97/188 (51%), Positives = 119/188 (63%), Gaps = 6/188 (3%)
Frame = +3
Query: 93 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRT 272
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELL +
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 273 PR---DCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-AKSIH 440
PR + + ++ V VL+ K + + I+ L ++ + + KL AKSIH
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEG-KMKLDYILGL--KIEDFLERRLQTQVFKLGLAKSIH 124
Query: 441 HARILIRQRHIRVRKQVVNIPSLLXAWTLQAH*LLS-ESPFXGGRLD-VSRGRTSAGTXW 614
HAR+LIRQRHIRVRKQVVNIPS + Q H S SP+ GGR V R G
Sbjct: 125 HARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGG 184
Query: 615 XSRHDEEK 638
D+E+
Sbjct: 185 AGAGDDEE 192
Score = 107 bits (258), Expect = 2e-22
Identities = 64/119 (53%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGC--E 430
L+EKDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK G
Sbjct: 63 LDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKS 122
Query: 431 VHPSCQNFDPAKAYSCPQASCEHPIIIXRLDSAXXXXXXXXXXXWRS-XGRVKRKNLRR 604
+H + + + P I RLDS GRVKRKN ++
Sbjct: 123 IH-HARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 95.1 bits (226), Expect = 1e-18
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Frame = +3
Query: 96 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTP 275
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + +
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 276 RDCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-----AKSIH 440
+ S+ + ++WF +Y N N CL ++ + RR + +K+IH
Sbjct: 70 KIPSQ--SYGILWFCYKYNFMN--NMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIH 125
Query: 441 HARILIRQRHIRVRKQVVNIPSLL 512
ARILI +HI+V+ Q+VN PS L
Sbjct: 126 EARILIMHKHIQVKNQIVNKPSFL 149
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 82.2 bits (194), Expect = 1e-14
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Frame = +3
Query: 99 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTPR 278
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + P+
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 279 DCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-----AKSIHH 443
+ L +++ N + + L + RR L AKSIHH
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQ-NKLEFV---LALKEENLLERRLQTLVYRKGFAKSIHH 124
Query: 444 ARILIRQRHIRVRKQVVNIPSLL 512
AR+LIR + I+V KQVV++PS L
Sbjct: 125 ARVLIRGKMIKVGKQVVDVPSFL 147
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = +2
Query: 260 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
+ KDPKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G
Sbjct: 63 DAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKG 117
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELL 59
Score = 32.7 bits (71), Expect = 8.1
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 299 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGCEVHP 439
L+ + R G+L +D VL LK+ LERRLQT V++ G P
Sbjct: 78 LISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLVYRKGLARSP 123
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 73.3 bits (172), Expect = 5e-12
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G
Sbjct: 53 LDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNG 108
Score = 63.7 bits (148), Expect = 4e-09
Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Frame = +3
Query: 96 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTP 275
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ L K R +
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQELLTLDEKNPRRIFEGEALL- 68
Query: 276 RDCSKVMPFYVVWFVLEYWMK-NR*NSIMCLV*RLRTSWSVVCRRRCSKLAAKSIHHARI 452
R ++ L+Y + N + C RL+T +V + KSIHH +
Sbjct: 69 RHMNRYGLLGEGQNKLDYVLALTVENFLQC---RLQT---IVFKNG----TVKSIHHDHV 118
Query: 453 LIRQRHI 473
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 69.3 bits (162), Expect = 8e-11
Identities = 30/56 (53%), Positives = 41/56 (73%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREII 59
Score = 39.1 bits (87), Expect = 0.093
Identities = 21/42 (50%), Positives = 28/42 (66%)
Frame = +2
Query: 299 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+ L R G+L E +D VL LK+E L+RRLQTQV++ G
Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRG 118
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 65.7 bits (153), Expect = 9e-10
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 9/147 (6%)
Frame = +3
Query: 99 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSR--RRT 272
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LL S
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 273 PRDCSKVMPFYVVWFVL-------EYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLAAK 431
P + ++ + + +L + + N N ++ L + R + L AK
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGL-AK 125
Query: 432 SIHHARILIRQRHIRVRKQVVNIPSLL 512
S+HHAR+LI R I ++ Q+V++P +
Sbjct: 126 SVHHARLLIGGRCISIKDQIVDVPGFM 152
Score = 37.9 bits (84), Expect = 0.22
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 8/53 (15%)
Frame = +2
Query: 290 GNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAG 424
G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AG
Sbjct: 70 GRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAG 122
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 65.7 bits (153), Expect = 9e-10
Identities = 31/68 (45%), Positives = 42/68 (61%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRR 266
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L R
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 267 RTPRDCSK 290
+ + K
Sbjct: 64 ASDANAQK 71
Score = 38.3 bits (85), Expect = 0.16
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +2
Query: 299 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFK 418
+++RL R +L +K LD VL L +E+ L+RRLQT VFK
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFK 114
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 62.5 bits (145), Expect = 9e-09
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Frame = +3
Query: 96 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTP 275
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L+ RT
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLISD--RTE 65
Query: 276 RDCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-----AKSIH 440
+ + + + V + +Y + N + V L + + RR L A++
Sbjct: 66 QGAKEAVQLFNV--LKKYGILKIENPTLDDV--LSLTVEDILERRLQTLVFRKGLARTPR 121
Query: 441 HARILIRQRHIRVRKQVVNIPSLL 512
AR LI HI V +VV PS +
Sbjct: 122 QARQLIVHGHIAVNGRVVTAPSYM 145
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
Score = 41.1 bits (92), Expect = 0.023
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +2
Query: 287 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + G
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 58.8 bits (136), Expect = 1e-07
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Frame = +3
Query: 117 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--PSRRRTPRDCSK 290
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL + R P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPF 75
Query: 291 VMPFYVVWFVLEYWMK-NR*NSIMCLV*RLRTSWSVVCRRRCSKLAAKSIHHARILIRQR 467
Y + F+ + ++ +R S+ R ++V R AKSIHHAR LI
Sbjct: 76 KEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMG----LAKSIHHARQLIVHG 131
Query: 468 HIRVRKQVVNIPSLL 512
H+ V + V P L
Sbjct: 132 HVAVAGRRVTSPGFL 146
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +2
Query: 266 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G
Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKG 120
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 54.0 bits (124), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L+
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLI 59
Score = 39.5 bits (88), Expect = 0.071
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 311 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L R G+L ++ LD VL L +E LERRLQT VF+ G
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKG 114
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +3
Query: 84 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2
Query: 290 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ G
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREG 110
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 50.8 bits (116), Expect = 3e-05
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFK 418
L EKDP+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQVF+
Sbjct: 63 LNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFE 121
Score = 41.5 bits (93), Expect = 0.018
Identities = 49/151 (32%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Frame = +3
Query: 195 EVWRVKYTLARIRKAARE-LLPSRRRTPR----DCSKVMPFYVVWFVLEYWMKNR*NSIM 359
EVWRVK+TL +IRKA E LL + PR D + + E MK R +
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 360 CLV*RLRTSWS-VVCRRRCSKLAA-KSIHHARILIRQRHIRVRKQVVNIPSLLXAWTLQA 533
LR +S + + +L KSI HA +L+ HIR+ KQVV+I +
Sbjct: 101 SWAFGLRIYFSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRK 160
Query: 534 H*LLSESPFXGG-------RLDVSRGRTSAG 605
H GG R +V +GR AG
Sbjct: 161 HTDFFRHCLNGGGYPGSVKRKNVKKGRGGAG 191
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 50.8 bits (116), Expect = 3e-05
Identities = 25/52 (48%), Positives = 38/52 (73%)
Frame = -3
Query: 409 LRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQSLGVLLLEG 254
L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQSL VL + G
Sbjct: 80 LGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSG 131
Score = 40.7 bits (91), Expect = 0.031
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
Frame = -2
Query: 569 TSTEWR-FREKSMCLQSPGAQ**WDVHNLLADTNMPLPDQNSGMMDGL-RSQL*TPASAD 396
++TEWR E ++ L+ WDV +LL ++N+ L DQ+S +++ L ++QL
Sbjct: 25 STTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQS 84
Query: 395 DAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRGEELTSSLTDTSER 216
Q ++ VF + W G++++ +D +
Sbjct: 85 SFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQL 144
Query: 215 VFDAPYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 102
++ F+LV +TV + LQ V+T F R+ V L
Sbjct: 145 ERNSVNFSLVLQTVFTSQLQFGVQTSGFVRSLWSRVSL 182
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL--LPS 260
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR L LP
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 261 RRRTPRDCSKVMPFY 305
R+ R+ + Y
Sbjct: 64 AERSTREKQLIQKLY 78
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/42 (47%), Positives = 32/42 (76%)
Frame = +2
Query: 299 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+++L R+G++++ LD +LGL E++LERRLQT V+K G
Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKG 114
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLL 59
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +3
Query: 102 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIIL 59
Score = 39.5 bits (88), Expect = 0.071
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +2
Query: 299 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
LL LVR G + KL+ VL L +ED L RRLQ+ VFK G
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRG 113
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 96 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 332 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
D ++ KLDYVL L +E+FLERRLQT VFK+G
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSG 47
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 46.8 bits (106), Expect = 5e-04
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Frame = +3
Query: 117 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTPRDCSKVM 296
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L +++ +D S+
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 297 PFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA----AKSIHHARILIRQ 464
++ L+ N+ + V L T V+ RR + L AK++ AR I
Sbjct: 70 ERFLT--KLKKLGVLSENAELDDVLDL-TVKDVLERRLQTMLVRKGLAKTMKQARQFIVH 126
Query: 465 RHIRVRKQVVNIPSLL 512
HI V +VV+ PS L
Sbjct: 127 GHIMVNGEVVDAPSYL 142
Score = 39.1 bits (87), Expect = 0.093
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +2
Query: 287 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
E L +L ++GVL E +LD VL L ++D LERRLQT + + G
Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKG 112
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 42.3 bits (95), Expect = 0.010
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3
Query: 198 VWRVKYTLARIRKAARELLPSRRRTPR 278
VWRVK+TLA+IRKAARELL + PR
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPR 27
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 39.9 bits (89), Expect = 0.053
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 102 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 254
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLL 59
Score = 37.5 bits (83), Expect = 0.28
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 299 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
++ R+V+ G+L E L+ VL + FLERRLQT VFK G
Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKG 111
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 35.5 bits (78), Expect = 1.1
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 12/141 (8%)
Frame = +3
Query: 150 QELKIIGEYGLRNKREVWRVKYTLARIRKAAREL--LPSR-----RRTPRDCSKVMPFYV 308
+E KI+ Y +++ E + + RI K EL LP + T K+ F +
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 309 VWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLAAKS-----IHHARILIRQRHI 473
++ L + + L R S SV CRRR + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 474 RVRKQVVNIPSLLXAWTLQAH 536
RV VVNIP+ L+ H
Sbjct: 147 RVGLDVVNIPAYHVTRELEDH 167
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 2.0
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 206 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 102
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
Score = 32.7 bits (71), Expect = 8.1
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = -3
Query: 571 RPPXNGD-SERSQCACRVQAXNNDGMFTTCLRTRICLCRIKILA*WMDFAASFEHLRLQT 395
RPP +G+ S +S C G FT CL TRI RIK A D A L+T
Sbjct: 54 RPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARP----SLKT 109
Query: 394 TLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQSLGVLLLE 257
+ V ++K ++ L +Q + +T E +L VLL++
Sbjct: 110 S---VCKRRSKKLV---LRLVQQTIRAHAANDSLTLEDALRVLLIK 149
>UniRef50_A0NE24 Cluster: ENSANGP00000018828; n=4; Culicidae|Rep:
ENSANGP00000018828 - Anopheles gambiae str. PEST
Length = 4258
Score = 34.3 bits (75), Expect = 2.7
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = -2
Query: 368 DQAHNRVSSVFHPVLQ-YEPDDVE-GHYLRTISWGPSPRGEELTSSLTDTSERVFDAPYF 195
D+A ++ +H +LQ EP + HY ++ W G E+ + L + ++ + D+PYF
Sbjct: 3438 DKAIMMTTTFWHKMLQNIEPTIIRLAHYGESLGWFV---GNEIFTFLYNKTQEIADSPYF 3494
Query: 194 TLVAETVLSDDLQLLVK 144
V T + DL LL K
Sbjct: 3495 NTV--TNFTQDLDLLYK 3509
>UniRef50_Q96XL2 Cluster: Putative uncharacterized protein ST2504;
n=1; Sulfolobus tokodaii|Rep: Putative uncharacterized
protein ST2504 - Sulfolobus tokodaii
Length = 509
Score = 32.7 bits (71), Expect = 8.1
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 78 NRVP-SVFSKTYVTPRR-PFEKAR--LDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR 245
N VP ++ ++ Y + P + AR L++ LK++ E G+ K + + + YTL R+ K
Sbjct: 22 NAVPLTIMAEEYAKEKNIPKQSARKVLEKRLKVLVEQGIVEKLKTYPISYTLKRLPK--N 79
Query: 246 ELLPSRRRTPRDCS 287
+LPS + CS
Sbjct: 80 FILPSSKILRLICS 93
>UniRef50_Q59683 Cluster: Uroporphyrinogen-III synthase; n=1;
Proteus mirabilis|Rep: Uroporphyrinogen-III synthase -
Proteus mirabilis
Length = 199
Score = 32.7 bits (71), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 269 PSPRGEELTSSLTDTSERVFDAPYFTLVAETVLS 168
PSP GE+LT L D + F AP + A LS
Sbjct: 8 PSPAGEQLTQRLIDAGKHAFHAPLIEIAAGKELS 41
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,745,407
Number of Sequences: 1657284
Number of extensions: 12067374
Number of successful extensions: 35187
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 34026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35172
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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