Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0199
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.8  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   9.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 248 APPLEEKDPKRLFEGNALLR 307
           AP  EEK P+  F G  L R
Sbjct: 223 APTAEEKRPRTAFSGAQLAR 242


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 323 GVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGCEVHPSCQNFDPA 463
           G LD  + KL   +     D L++         G EVH  C N  P+
Sbjct: 331 GQLDPTKEKLYDAIEALYGDMLKQFKPPLFHMGGDEVHLGCWNSTPS 377


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 607 VPAEVLPLDTSXRPPXNGDSERSQC 533
           VP ++LP D        GD    QC
Sbjct: 601 VPPQILPFDFGEDSINEGDGVSVQC 625


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 437 PSCQNFDPAKAYSCP 481
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 437 PSCQNFDPAKAYSCP 481
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,063
Number of Sequences: 336
Number of extensions: 2991
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)