Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0199
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 127 1e-30
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 127 2e-30
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 27 2.4
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 25 9.7
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 25 9.7
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.7
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 9.7
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 127 bits (307), Expect = 1e-30
Identities = 76/164 (46%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRR 266
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELL
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 267 RTPRDCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-AKSIHH 443
+ P+ + L ++R L R+ + + KL AKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 444 ARILIRQRHIRVRKQVVNIPSLLXAWTLQAH-*LLSESPFXGGR 572
AR+LI QRHIRV KQ+VN+PS + Q H SP+ GGR
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGR 168
Score = 102 bits (244), Expect = 5e-23
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK G
Sbjct: 62 LDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLG 117
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 127 bits (306), Expect = 2e-30
Identities = 76/164 (46%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = +3
Query: 87 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRR 266
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELL
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 267 RTPRDCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-AKSIHH 443
+ P+ + L + R L R+ + + KL AKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 444 ARILIRQRHIRVRKQVVNIPSLLXAWTLQAH-*LLSESPFXGGR 572
AR+LI QRHIRV KQ+VN+PS + Q H SP+ GGR
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGR 168
Score = 101 bits (243), Expect = 7e-23
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK G
Sbjct: 62 LDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLG 117
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 400
L+ DP RL N LL +L +G+L K D + RRL
Sbjct: 64 LDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRL 111
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 624 GGSATXSLRRFFLLTRPXDLHXMEIQREVNVLAESRR 514
G +RRFF L++ D+ I+REV E ++
Sbjct: 134 GPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 624 GGSATXSLRRFFLLTRPXDLHXMEIQREVNVLAESRR 514
G +RRFF L++ D+ I+REV E ++
Sbjct: 134 GPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 60 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 218
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = -2
Query: 329 VLQYEPDDVEGHYLRTISWGPSPRGEELTSSLTDTSERVFDAPYFTLVAETVLS 168
VL P Y+R + GPSP +++ + ++ T V ++ + + V+++ LS
Sbjct: 53 VLLNAPPRNADEYIRYVRQGPSPMAQKIQNDVSRT--LVVESQFHSRVSQSSLS 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,120
Number of Sequences: 5004
Number of extensions: 49646
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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