Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0199
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 134 4e-32
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 32 0.42
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 32 0.42
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 32 0.42
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 32 0.42
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 32 0.42
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 2.9
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 3.9
U55856-3|AAA98022.2| 472|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 28 5.1
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 5.1
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 27 9.0
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 134 bits (325), Expect = 4e-32
Identities = 86/190 (45%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Frame = +3
Query: 81 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPS 260
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 261 RRRTPR---DCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-A 428
+ P+ + + ++ V VL+ K + + ++ L ++ + + KL A
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDE-TKMKLDYVLGL--KVEDFLERRLQTQVFKLGLA 119
Query: 429 KSIHHARILIRQRHIRVRKQVVNIPSLLXAWTLQAH*LLS-ESPFXGGRLDVSRGRTSAG 605
KSIHHARILI+Q HIRVR+QVV++PS + Q H S +SP+ GGR + RT
Sbjct: 120 KSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179
Query: 606 TXWXSRHDEE 635
DEE
Sbjct: 180 GDGAGGDDEE 189
Score = 107 bits (258), Expect = 5e-24
Identities = 64/119 (53%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGC--E 430
LE+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK G
Sbjct: 62 LEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKS 121
Query: 431 VHPSCQNFDPAKAYSCPQASCEHPIIIXRLDSAXXXXXXXXXXXWRS-XGRVKRKNLRR 604
+H + + + P I RLDS GRVKR+ LR+
Sbjct: 122 IH-HARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +2
Query: 428 EVHPSCQNFDP------AKAYSCPQASCEHPIIIXRLDS 526
+VH QNFD AKA S PQ + EHP I RLD+
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDIRQRLDT 816
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +2
Query: 428 EVHPSCQNFDP------AKAYSCPQASCEHPIIIXRLDS 526
+VH QNFD AKA S PQ + EHP I RLD+
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDIRQRLDT 816
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +2
Query: 428 EVHPSCQNFDP------AKAYSCPQASCEHPIIIXRLDS 526
+VH QNFD AKA S PQ + EHP I RLD+
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDIRQRLDT 816
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +2
Query: 428 EVHPSCQNFDP------AKAYSCPQASCEHPIIIXRLDS 526
+VH QNFD AKA S PQ + EHP I RLD+
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDIRQRLDT 816
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +2
Query: 428 EVHPSCQNFDP------AKAYSCPQASCEHPIIIXRLDS 526
+VH QNFD AKA S PQ + EHP I RLD+
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDIRQRLDT 816
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 498 CSQLACGHEYAFAGSKFWHDG 436
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 501 GCSQLACGHEYAFAGSKFWH 442
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>U55856-3|AAA98022.2| 472|Caenorhabditis elegans Hypothetical
protein F31E8.5 protein.
Length = 472
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 PPLEEKDPKRLFEGNALLRRL-VRIGVLDEKQMKLDYVLGLK 373
PP++EKD K+ + A L+ L ++ GVL ++ + V GLK
Sbjct: 241 PPVKEKDAKKSIDLLAYLKTLDMKNGVLANREKTCESVGGLK 282
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 317 EPDDVEGHYLRTISWGPSPRGEELTSSLTDTSERVFDAPY 198
+P EG TI+ P P G+ LT DTS + PY
Sbjct: 161 KPTGNEGRQGNTIAPAPLPVGKPLTQHAVDTSAQSAKRPY 200
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 398 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 264
+DA + Q+S A + + ++H V + E +GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 461 PDQNSGMMDGLRSQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPD 309
P + +G+ + D AP +P++ + + + SV HP +YE D
Sbjct: 2437 PGEGTGVTRSFYTAFAESCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 461 PDQNSGMMDGLRSQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPD 309
P + +G+ + D AP +P++ + + + SV HP +YE D
Sbjct: 2437 PGEGTGVTRSFYTAFAESCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487
>Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical
protein R05H5.1 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 115 VTYVFENTDGTLLFTILASSH 53
+ YVF+N+D LLF IL H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 470 MPLPDQNSGMMDGLRSQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEG 297
+P P+ + R + T A PR P+SS H+RV + + + + DD EG
Sbjct: 70 LPPPNPYNTAPTHYRRRSSTEAHRYHPPRQPRSSAPTHHRVPADYPSDEEDDYDDTEG 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,496
Number of Sequences: 27780
Number of extensions: 290453
Number of successful extensions: 908
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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