Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1S1M3 Cluster: Sensor protein; n=1; Shewanella amazone...    33   6.1  
UniRef50_A5D8Q3 Cluster: LOC100049773 protein; n=3; Xenopus|Rep:...    33   8.1  

>UniRef50_A1S1M3 Cluster: Sensor protein; n=1; Shewanella
           amazonensis SB2B|Rep: Sensor protein - Shewanella
           amazonensis (strain ATCC BAA-1098 / SB2B)
          Length = 1021

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 263 HLRVIIDSLSMAGTFTASISFVFAAQTSDKQLLGNLQYTVIQTAHFICDPFMILKFI 93
           HL  I   L     F       F A  S +Q +G L  T++ + H++C P   LK +
Sbjct: 693 HLVSITQELQKMAAFATEKGLKFLAIISHRQQIG-LAPTILSSCHYLCRPMQALKLV 748


>UniRef50_A5D8Q3 Cluster: LOC100049773 protein; n=3; Xenopus|Rep:
           LOC100049773 protein - Xenopus laevis (African clawed
           frog)
          Length = 397

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 48  KSVWSKNKLLCLTLKYEFQY-HEGITNKMCC 137
           K +WS  KL  L   YE QY H+G+ +KM C
Sbjct: 161 KCMWSPGKLDDLNSNYELQYWHKGLRHKMVC 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,289,197
Number of Sequences: 1657284
Number of extensions: 10054418
Number of successful extensions: 18099
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18094
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)