Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    32   0.085
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.7  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 281 YFCQFLHLRVIIDSLSMAGTFTASISFVFAAQTSDKQLLGNLQYTVIQTAHFICDPFMIL 102
           YF + L L V+ ++    G F   ++FV        +  GN QY  +  +  I DP   +
Sbjct: 433 YFFKNLKLFVLDEAHVYNGIFGVHVAFVLRRMRRIAEYFGNSQYRFVSCSATIEDPLQHM 492

Query: 101 KFIF 90
           K IF
Sbjct: 493 KKIF 496


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 459 LMPNFVLQGRCNNYXEHNNQYNSVKF 382
           + PNF LQ   N Y    + ++S+K+
Sbjct: 215 VFPNFSLQSVSNGYMSMESNFSSIKY 240


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 272  DKSRSKDNFNFLLDPLGFKFFYYTGLVQGKALY 370
            D +    N +  ++P    FF +TG + GKALY
Sbjct: 2941 DATTFHPNRDSSVNPDHLSFFKFTGRIIGKALY 2973


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 523 RNSSPFNIFNSRKIFRRLKIYGQS*IEPEKSNFKKPFECGI 645
           +NS   +++N   +F+RLK Y +     E S  K+  + G+
Sbjct: 321 KNSEGIDLWNGESVFQRLKEYYEFLASHEASAIKELTKRGV 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,395
Number of Sequences: 5004
Number of extensions: 48006
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)