Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065488-1|BAC05740.1|  282|Homo sapiens seven transmembrane hel...    31   4.9  

>AB065488-1|BAC05740.1|  282|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 275 CQFLHLRVIIDSLSMAGTFTASISFVFAAQTSDKQLLGNLQYTVIQT---AHFICDPFMI 105
           C  LH  VI++       F   +SF  +   S       LQ+T+I+    ++F+CDP  +
Sbjct: 160 CHPLHYPVIVNPHLCV--FFVLVSFFLSLLDSQLHSWIVLQFTIIKNVEISNFVCDPSQL 217

Query: 104 LKF 96
           LKF
Sbjct: 218 LKF 220


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,731,871
Number of Sequences: 237096
Number of extensions: 1422155
Number of successful extensions: 1906
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1906
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)