Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067607-6|AAY86221.1|  461|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AF067607-6|AAY86221.1|  461|Caenorhabditis elegans Hypothetical
           protein C18H7.11 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 290 LLTYFCQFLHLRVIIDSLSMAGTFTASI---SFVFAAQTSDKQLLGNLQYT 147
           LL+   Q +   + +   S  GT T S+   + V+ A   D QLL N+Q T
Sbjct: 11  LLSISVQAVPKVIYLTQFSSIGTITVSVESGAHVYLASNDDNQLLKNIQLT 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,320,715
Number of Sequences: 27780
Number of extensions: 260190
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)