Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.16 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 251 LPVDVRIDKSRSKDNFNFLLDPLGFKFFYY 340
           + VDVR  + + KD F ++ D  GF    Y
Sbjct: 182 IAVDVRDTEDKCKDTFAYIADVTGFALLVY 211


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -3

Query: 567 KYFSRVKNIERT*VTNYRSRXTIKHLKTVSRTKIXCLMPNFVLQGRCNNYXEHNNQYNSV 388
           KY  R K   R      RSR   K + ++S   I     N       NNY  +NN YN+ 
Sbjct: 58  KYRERSKERSRDRTERERSREP-KIISSLSNKTIH--NNNNYNNNNYNNYNYNNNNYNNY 114

Query: 387 K 385
           K
Sbjct: 115 K 115


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -3

Query: 567 KYFSRVKNIERT*VTN---YRSRXTIKHLKTVSRTKIXCLMPNFVLQGRCNNYXEHNNQY 397
           K +SR +  E+    N   YR        ++  RT+        ++     NY  +NN Y
Sbjct: 259 KRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY 318

Query: 396 NSVK 385
           NS K
Sbjct: 319 NSKK 322


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -3

Query: 567 KYFSRVKNIERT*VTN---YRSRXTIKHLKTVSRTKIXCLMPNFVLQGRCNNYXEHNNQY 397
           K +SR +  E+    N   YR        ++  RT+        ++     NY  +NN Y
Sbjct: 270 KRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY 329

Query: 396 NSVK 385
           NS K
Sbjct: 330 NSKK 333


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 426 NNYXEHNNQYNS 391
           NNY  +NN YN+
Sbjct: 96  NNYNNYNNNYNT 107


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 426 NNYXEHNNQYNS 391
           NNY  +NN YN+
Sbjct: 335 NNYNNYNNNYNN 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,305
Number of Sequences: 438
Number of extensions: 4092
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)