Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    30   1.2  
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ...    28   6.4  

>At2g03140.1 68415.m00267 CAAX amino terminal protease family
           protein very low similarity to SP|Q40863 Late
           embryogenesis abundant protein EMB8 from Picea glauca;
           contains Pfam profile PF02517 CAAX amino terminal
           protease family protein
          Length = 1805

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 469 FCSGNSFEVFYRXPRSIVRNSSPFNIFNSRKIFRRLKIYGQS*IEPEKSNFKKPFE 636
           + S +S  +F + P + +  +SPF +  SRK   R K   ++ +    S F  PF+
Sbjct: 2   YSSSSSSSIFLQFPPARITTASPFILRRSRKRGARFKRQSRNLVLVNSSIFPPPFD 57


>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 764

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 254 VIIDSLSMAGTFTASISFVFAAQTSDKQLLGNLQYTVIQTAHFI-CDPFMILKFIFQ 87
           ++IDSL + G    + SF+++ Q  +   L    YT +  AH +  DP M +K   Q
Sbjct: 640 ILIDSLCVYGYIRKADSFIYSLQEQNVS-LSKFAYTTLIKAHCVKGDPEMAVKLFHQ 695


>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 602

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 405 YCALCNYCIC 434
           YC++CN+CIC
Sbjct: 152 YCSICNFCIC 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,787
Number of Sequences: 28952
Number of extensions: 225101
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)