Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0193
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    33   0.003

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = -2

Query: 315 FFFRSFQLCSLIYSLIYCYVISSI*LDSFCA*ACLDLLQIYSYTL-VFQVIIVTYTYIAS 139
           +F+ +F +   +Y   Y ++I ++ L        L LL IY + + +F ++ + Y Y A 
Sbjct: 102 YFYYAFIILLCVYYFYYAFIIFTVHL--------LFLLCIYYFVVPLFFLLCIYYFYCAF 153

Query: 138 RMFTV*LVF--CVSIVFCLY 85
            +FTV L+F  C+   FC +
Sbjct: 154 IIFTVHLLFLLCIYHFFCAF 173



 Score = 28.7 bits (61), Expect = 0.044
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -1

Query: 298 SIMFTNLFINLLLC--YF-IHIT*QFLCIGLLRPVTNIFLHSRFSSYYCNIHIYCITYVY 128
           SI F N+ +  LLC  YF +H+   F C  ++  V   FL   +  YY  I + C+ Y Y
Sbjct: 63  SITF-NVHLLFLLCSGYFTVHLL--FYCPFIIFTVH--FLLCTYYFYYAFIILLCVYYFY 117

Query: 127 SLVSILCVHCILFI 86
               I  VH +LF+
Sbjct: 118 YAFIIFTVH-LLFL 130



 Score = 27.1 bits (57), Expect = 0.14
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = -2

Query: 351 YFKMHKKWFISVFFFRSFQLCSLIYSLIYCYVISSI*LDSFCA*ACLDLLQIYSYTLVFQ 172
           YF +H  +   +++F S  +   I+ L YC +I  +     C         +++  L+  
Sbjct: 201 YFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILL-----CIYYFYYAFILFTVHLLLL 255

Query: 171 VIIVTYTYIASRMFTV*LVFCVSIVF--CLYF 82
           V I  + Y+        ++F + ++F  C+Y+
Sbjct: 256 VCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYY 287



 Score = 25.4 bits (53), Expect = 0.41
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -1

Query: 331 MVHFCFFLS*FSIMFTNLFINLLLC--YFIHIT*QFLCIGLLRPVTNIFLHSRFSSYYCN 158
           ++  C +   ++ +   + + LL+C  YF ++   F C  ++  +  +FL   +  Y   
Sbjct: 233 IILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCAL 292

Query: 157 IHIYCITYVYSLVSILCVH 101
           I + CI Y      I   H
Sbjct: 293 IILLCIYYFCRAFIIFPTH 311



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 207 LLQIYSYTLVFQVIIVTYTYIASRMFTV*LVFCVSIVF 94
           L   Y Y     ++ V Y Y A  +FTV L+F + I +
Sbjct: 98  LCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYY 135



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 198 IYSYTLVFQVIIVTYTYIASRMFTV*LVFCVSIVF 94
           I++  L+F ++ + + + A  +FT+ L+FC + +F
Sbjct: 155 IFTVHLLF-LLCIYHFFCAFIIFTMHLLFCCAFIF 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,982
Number of Sequences: 336
Number of extensions: 2962
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)