Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0193
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.1  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.6  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 127 CKHT*CNICVCYNNNLKNESVRIYL 201
           C H  C IC  YN+ +K  S+ I L
Sbjct: 54  CLHIRCCICCKYNSKIKKPSLNIAL 78


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 312 FFRSFQLCSLIYSLIYCYVISSI 244
           FFR F +CS  + L+Y ++ +++
Sbjct: 18  FFRLFFVCSFFFPLLYSFIFATL 40



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 516 FIFGFSSFNIHCNLIYL*IVQ*HTYXNLDVSLICF*IFFNVFS 388
           F F F  F+ HC   ++ I   H Y +  V   CF  +F++FS
Sbjct: 78  FFFFFFFFS-HCRRFHIAIFI-HPYDSNVVPFFCFFFYFSLFS 118


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 300 FQLCSLIYSLIYCYVISSI*LDSFCA*ACLDLLQIYSYTLVF 175
           + + SL+ +++ CY I +  +  F A A + +   YSY L++
Sbjct: 571 YPVYSLLVTIMICYSIIAPIIIGFAAVAFVLIYFAYSYNLIY 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,444
Number of Sequences: 5004
Number of extensions: 44824
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)