Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0193
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)                  32   0.36 
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  32   0.47 
SB_12514| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_35719| Best HMM Match : OAD_gamma (HMM E-Value=5.3)                 29   2.5  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)
          Length = 401

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/86 (19%), Positives = 39/86 (45%)
 Frame = -2

Query: 351 YFKMHKKWFISVFFFRSFQLCSLIYSLIYCYVISSI*LDSFCA*ACLDLLQIYSYTLVFQ 172
           Y     +W +  FF  S  +C  +Y+L +  + SS          CL+L+ +  Y    +
Sbjct: 81  YLPFEIEWHVRTFFKHSATVCDFVYTLFFITISSS----------CLNLMAVSGY----R 126

Query: 171 VIIVTYTYIASRMFTV*LVFCVSIVF 94
              + Y + + ++    + +C++I++
Sbjct: 127 FFTIAYPFWSKKITKTHVFYCIAIIW 152


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 322 FCFFLS*FSIMFTNLFINLLLC-YFIHIT*QFLCIGLLRPVTNIF-----LHSRFSSYYC 161
           FC      +I+   LF+    C  F+ IT    C+ ++    ++F     +H+R    Y 
Sbjct: 224 FCSLFVLITIVHARLFMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIIHARLFMIYA 283

Query: 160 NIHIYCITYVYSLVSILCVHCILFI 86
              ++C+ Y  S  S+  +  + F+
Sbjct: 284 YCSLFCLNYNCSRASVYDLRVLFFV 308


>SB_12514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 351 YFKMHKKWFISVFF-FRSFQLCSLIYSLIYCYVISSI 244
           YFK+ +K++++  + FR    CSL Y++  CYV + +
Sbjct: 32  YFKLQRKYYVNTTYKFRDL-ACSLKYTIGVCYVRNKV 67


>SB_35719| Best HMM Match : OAD_gamma (HMM E-Value=5.3)
          Length = 262

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 175 SSYYCNIHIYCITYVYSLVSILCVHCILFIFR*MI 71
           ++ YC IHI  + Y   + ++ C+H +L ++R +I
Sbjct: 145 NAVYC-IHIVLVVYRRLINAVYCIHIVLVVYRRLI 178


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 298  SIMFTNLFINLLLCYFIHIT*QFLCIGLLRPVTNIFLHSRFSSYYC-----NIHIYCITY 134
            S++F  L + +L+ YF       L  GLLR +  ++     S   C     ++HIY + Y
Sbjct: 2816 SLLFFQLLLPVLVIYFTMSLVLKLTFGLLRLICTVYNWVDMSQIVCVSAWMSVHIYKMIY 2875

Query: 133  V 131
            +
Sbjct: 2876 I 2876


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,375,119
Number of Sequences: 59808
Number of extensions: 286093
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)