Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0193
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical ...    28   5.1  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   8.9  
AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 656 CIISISHLFLILQFWXGSSDMGWYHRDLILIXCC 555
           C + I++  + +Q +    DM WY R + +  CC
Sbjct: 398 CTVKIAYFVVTMQCFGAFFDMKWYARYIEIARCC 431


>AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical
           protein F08E10.1 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -3

Query: 317 FFSFVVFNYVH*FIH*FIVMLFHPYNLT-----VFVHRP 216
           F SF+ FNY + F +  IV  F  + +      VFVHRP
Sbjct: 256 FISFIYFNYQNQFHNNLIVFAFAVHGIASTLIMVFVHRP 294


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 336 KKWFISVFFFRSFQLCSLIYSLIYCYVISSI*LDSFC 226
           K  F    F   FQL   I +L  CY  SS+ LD  C
Sbjct: 399 KSMFNMPLFEEMFQLVGNIQNLTACYGNSSVKLDDIC 435


>AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical
           protein Y113G7B.14 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 HNNKLMNKLVNIIENYERKKQK*TISYAF 344
           H N  + K +NII+    KK+K T+S  F
Sbjct: 425 HPNARITKTINIIQEVLMKKEKVTVSVVF 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,352
Number of Sequences: 27780
Number of extensions: 248507
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)