Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0193
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    26   0.28 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.8  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 398 TSFPLLNCFSSY*VHSILKCIRNGSFLFFSFVVFNYVH*FIH*FIVMLF 252
           TS PLL CF       I KC  N   +  S+V+F+ +  F    +VML+
Sbjct: 171 TSPPLLGCFPRATNRDIKKCSYN---MDSSYVIFSAMGSFFLPMLVMLY 216


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 649 YPYLTYFSFYNSGXDLQIWDGII 581
           YPY  Y +F   G    + DGI+
Sbjct: 227 YPYPPYGTFNIKGDTFDLMDGIL 249


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 219 ACLDLLQIYSYTLVFQVIIVTY 154
           A LD+   Y+Y  + Q+ IV Y
Sbjct: 493 ALLDIFDTYTYDTICQLNIVHY 514


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 65  WLNHSSKYKQ 94
           WLNHS  Y Q
Sbjct: 661 WLNHSPNYDQ 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,782
Number of Sequences: 438
Number of extensions: 3076
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)