Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0191
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    27   1.8  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   4.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.2  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   4.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   5.6  

>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 326 ILKVGHFSKLL--LCETVSLPLPSILFSAHR 412
           +LKVGHFS+L+  L   +   +P I FS ++
Sbjct: 274 LLKVGHFSQLMLKLFRVIIFTIPQIRFSIYQ 304


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 327 Y*KWDTFPNFSYVRRSPYLYPPYFSLRTDNMTF 425
           Y  +D F +   V+ +PYL P YF    DN+ F
Sbjct: 476 YVMYDQFTSNRVVKTNPYLIPSYFD---DNVIF 505


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -2

Query: 353  VWKSVPLSVLNNSSIILQDGASIGTRYYDMN*ALYN*LKYAELGNLIYLMTRVVSDLTCL 174
            +W S  + + NNSS +  D    G R + ++   +      E G  + +    + DL C 
Sbjct: 1809 MWSSSDIRIPNNSSQLSIDSVRSGMRPFSLSKVPHQ--FDDEEGKALQIFREKLKDLNCK 1866

Query: 173  RSLN 162
             S+N
Sbjct: 1867 NSMN 1870


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 395 VWRVKVRRPSHIGEVWKSVPLSVLNNS 315
           +W +    P    E+W+S+P S LN+S
Sbjct: 791 IWAISPITPLLAQEIWQSLPDSYLNSS 817


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 452 NFIKGHWHTKCHIICAQRKVWRVKVRRPSHI 360
           N +  +WH  CH+I    K W VK+ + + I
Sbjct: 257 NGVSQNWHVPCHMI---YKFWNVKLCQKTSI 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,669
Number of Sequences: 5004
Number of extensions: 45467
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)