Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0191
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)                   29   4.5  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    28   7.8  

>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
          Length = 380

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  DKKMQSMSPLFTTA-IILGYIDEISLDYVN 178
           D  +QS++P F    +++ Y+DE++ D++N
Sbjct: 182 DAGLQSLAPCFQLKKLVISYLDEVTHDFIN 211


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 399 SLRTDNMTFSMPMPFNKIL*RIKSYSRYRTLCSSI 503
           S R +  +   P+ FN    +IK + RYR +CSS+
Sbjct: 371 SSRIETESRRAPLNFNSDEFKIKRHLRYRNICSSL 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,140,963
Number of Sequences: 59808
Number of extensions: 321553
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)