Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0191
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   6.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +1

Query: 214 IKFPNSA-YFNQLYNAQFI 267
           +KF N A Y NQ+Y  QF+
Sbjct: 75  LKFSNIAPYLNQIYGGQFV 93


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 285 RHKVL*YELSIVQLIEVC*VRKFNIFND 202
           R+ ++  E   VQL   C ++KFN ++D
Sbjct: 48  RNGIIDVENEKVQLFSECLIKKFNAYDD 75


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +2

Query: 59  YKITKSILFKADKKMQSMSPLFTTAIILGYIDEI 160
           Y ++ +++ + D K+  + P++     L + DE+
Sbjct: 140 YALSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEV 173


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +2

Query: 59  YKITKSILFKADKKMQSMSPLFTTAIILGYIDEI 160
           Y ++ +++ + D K+  + P++     L + DE+
Sbjct: 140 YALSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEV 173


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 252 VQLIEVC*VRKFNIFND 202
           VQL   C ++KFN ++D
Sbjct: 59  VQLFSECLIKKFNGYDD 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,401
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)