Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0185
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.6  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 419 LKRRPTPASRLDRRSPEATTFATQNGPVRLFPSILHIALIINSQFSKSIKNR 574
           L  RP P+S   RRS   +     + P    PS+L  +L  +S+ S S + R
Sbjct: 469 LSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGSLANSSEHSSSPRLR 520


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +1

Query: 322 SSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQPT*PXFTGSHNIRNTKRTR 501
           SSS   +   S+   S+  SS      +  SSS ++++SS P     + SH+  ++  + 
Sbjct: 168 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS 227

Query: 502 ASFSVYSSHSPNY 540
           +S S   S S ++
Sbjct: 228 SSSSSRPSSSSSF 240



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 322 SSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQPT*PXFTGSHNIRNTKRTR 501
           SSS   +   S+   S+  SS      +  SSS ++++SS  +    + S ++  T  T 
Sbjct: 156 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTS 215

Query: 502 ASFSVYSSHS 531
           +S S  SS S
Sbjct: 216 SSHSSSSSSS 225



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 322 SSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQPT*PXFTGSHNIRNTKRTR 501
           SSS   +   S+   S+  SS      +  SSS ++++SS  +    T S +  ++  + 
Sbjct: 164 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSS 223

Query: 502 ASFSVYSSHSPN 537
           +S S  SS  P+
Sbjct: 224 SSSSSSSSSRPS 235


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 110  KRQKKGAGARHVAYGTFRCFHARSLGCKLSR 18
            KR+  GAG   +  G  RC HA     +LS+
Sbjct: 1315 KREAAGAGNFEITMGKLRCLHALGEWDRLSQ 1345


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +1

Query: 301 STGRLLHSSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQPT*PXFTGSHNI 480
           ST   + SSS   + + S    S+  SS         SSS  +++SS P+   F+ +   
Sbjct: 302 STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST--- 358

Query: 481 RNTKRTRASFSVYSSHS 531
            ++ ++ +SFS   S S
Sbjct: 359 TSSSKSSSSFSSTVSSS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,772
Number of Sequences: 5004
Number of extensions: 43189
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)