Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0185
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0433 + 3794440-3794948,3795696-3796707                           29   2.5  
07_03_0019 + 12498351-12498917                                         29   3.3  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    29   3.3  
04_04_0558 - 26231752-26231837,26231929-26231974,26232059-262321...    29   3.3  
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925...    29   3.3  
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143...    29   4.4  
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     28   7.7  

>08_01_0433 + 3794440-3794948,3795696-3796707
          Length = 506

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 215 AVVTGCRETIVADHVFRRACVRRGGNCD 298
           AV TG        H  RRAC RRGG C+
Sbjct: 5   AVGTGWGRIRRRRHALRRACWRRGGRCE 32


>07_03_0019 + 12498351-12498917
          Length = 188

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 236 ETIVADHVFRRACVRRGGNCDHRPGDCCTRPP 331
           E  V+ H FR  C RR G C  +PG   T  P
Sbjct: 63  ENEVSCHRFRPPCYRRLGLCVEKPGRATTATP 94


>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
            21260180-21260461,21261084-21261587,21261973-21261981,
            21262122-21262196,21262375-21262449,21262557-21263494,
            21263577-21263607,21263694-21263979,21264691-21264905,
            21265329-21265437,21265556-21265611,21265730-21265822,
            21266348-21266393,21266496-21267221,21267489-21267550,
            21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 147  YIDP-GDDDLEVNLPDYGEDPADLQLLQD 230
            +++P  D+ +E   PDY EDP +++L +D
Sbjct: 1193 HVEPVADEKMEDEEPDYEEDPEEVELYED 1221


>04_04_0558 -
           26231752-26231837,26231929-26231974,26232059-26232139,
           26232250-26232336,26232459-26232548,26232650-26232841,
           26232973-26233179
          Length = 262

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 262 QACLCAARRQLRPSTGRLLHSSSCRCNLWGSNCR-CSAWGSSEVGVGDNDRSSSEAATNS 438
           +AC  A R QL P+        SCR +  G+ CR  +A  S     G  D  ++E +   
Sbjct: 3   RACSPALRLQLPPNPPITPQLPSCRTHSAGARCRGFAAAHSQPPAAGRPDEPAAEPS--- 59

Query: 439 SQPT*PXFTGSHNIRNTKR 495
             P  P    + N+R ++R
Sbjct: 60  --PKQPEIAQTQNLRRSRR 76


>02_05_0752 +
           31491462-31491921,31492177-31492271,31492346-31492573,
           31493070-31493157,31493275-31493326,31493985-31494050,
           31494382-31494536,31494633-31494703,31494820-31495017,
           31495103-31495144,31496223-31496324,31496514-31496603,
           31496708-31496783,31497299-31497395,31497488-31497557,
           31497676-31497852,31498156-31498239,31498971-31499093,
           31500143-31500226,31500318-31500502,31500592-31500730,
           31500841-31500900,31500969-31501040,31501136-31501197,
           31501839-31501945,31501984-31502058,31502800-31503248
          Length = 1168

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 346 WGSNCR-CSAWGSSEVGVGDNDRSSSEAATNSS 441
           WG+  R C  +GSS+ GVG  +  S+ AA  SS
Sbjct: 40  WGAGRRLCRFYGSSKGGVGSAEARSAAAAEGSS 72


>08_02_0512 +
           18012909-18013025,18013656-18013751,18014102-18014389,
           18014551-18014750,18015313-18015548,18015809-18015951,
           18016059-18016130,18016231-18016458
          Length = 459

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 259 FQACLCAARRQLRPSTGRLLHSSSCRCNL 345
           F  C C  R  LRPS GR       RC L
Sbjct: 7   FPTCCCCRRPSLRPSAGRRGRRPVARCAL 35


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 186 ASSLPDHRLRDQYKRHEPILL 124
           A +LP H +RD  +RH P++L
Sbjct: 56  AGALPHHAMRDLARRHGPLML 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,478
Number of Sequences: 37544
Number of extensions: 340562
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)