Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0185
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.9  
SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)           28   7.9  

>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 349 GSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQPT 450
           G N   S WGS E  V D  R+ S  +T SS+ T
Sbjct: 590 GGNWDTSDWGSLESSVQDPVRTGSFGSTKSSKST 623


>SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)
          Length = 423

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 458 RSPEATTFATQNGPVRLFPSILHIALIINSQFSKSIKNRDLYLVLKILG 604
           R  +  ++   NG +++FP       ++ ++FS +IK R + +V++  G
Sbjct: 306 RGDQWQSYQDVNGVIKIFPGNSGQTTVVKNEFSPAIKARYVRIVVQAWG 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,894,526
Number of Sequences: 59808
Number of extensions: 356598
Number of successful extensions: 1268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)