Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0182
         (666 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    38   0.22 
UniRef50_Q23F40 Cluster: Zinc finger domain, LSD1 subclass famil...    35   2.0  
UniRef50_A2FUM7 Cluster: Bifunctional endo-1,4-beta-xylanase xyl...    34   2.7  
UniRef50_Q6IMC1 Cluster: S22 sporozoite-expressed protein; n=11;...    34   3.5  
UniRef50_Q7RGH3 Cluster: Expressed protein; n=2; Plasmodium (Vin...    33   8.2  
UniRef50_Q8M355 Cluster: Mitochondrial ribosomal protein VAR1; n...    33   8.2  

>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 37.9 bits (84), Expect = 0.22
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 148 NNVSSFT*IYKMSNHFN---NYLYNDQTDNTSYLNLNFSISIPVTRFICNHIGEFIICN* 318
           NN + +  IY + N+FN   NY Y    +N +++N N+        FI  +     I N 
Sbjct: 484 NNNNKYNVIYFLINYFNLFSNYYYKIYNNNYNFINSNYYFK--KMNFILKNFNNIQILNK 541

Query: 319 LFYLPTPLVILKVDRSLRINL 381
           LFY+    +  K ++ L I L
Sbjct: 542 LFYVNNIFIYYKYEKKLFIYL 562


>UniRef50_Q23F40 Cluster: Zinc finger domain, LSD1 subclass family
            protein; n=4; Tetrahymena thermophila SB210|Rep: Zinc
            finger domain, LSD1 subclass family protein - Tetrahymena
            thermophila SB210
          Length = 2510

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +1

Query: 124  YFYKYIN*NNVSSFT*IYKMSNHFNNYL--YNDQTDNTSYLNLNFSISIPVTRF 279
            Y +KYIN NN+ S     K+   +NN++  YN Q +N++ LN N S+S  +  F
Sbjct: 2402 YKWKYINQNNIGSKK-FLKLKQIYNNHVNAYNTQNNNSAILN-NSSLSSNLNSF 2453


>UniRef50_A2FUM7 Cluster: Bifunctional endo-1,4-beta-xylanase
           xylA-related protein; n=1; Trichomonas vaginalis G3|Rep:
           Bifunctional endo-1,4-beta-xylanase xylA-related protein
           - Trichomonas vaginalis G3
          Length = 632

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 148 NNVSSFT*IYKM-----SNHFNNYLYNDQTDNTSYLNLNFSISIPVTRFICNH 291
           NNV ++   YK        +FNN ++ +Q DNT  LN+NF  ++P T    N+
Sbjct: 170 NNVKTWNPYYKFLPDLSEIYFNNNIFTEQPDNTG-LNINFITNLPSTSTAVNY 221


>UniRef50_Q6IMC1 Cluster: S22 sporozoite-expressed protein; n=11;
           Plasmodium (Vinckeia)|Rep: S22 sporozoite-expressed
           protein - Plasmodium yoelii
          Length = 3063

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +1

Query: 97  FKNL*LLQFYFYKYIN*NNVSSFT*IYKMSN----HFNNYLYNDQTDNT-SYLNLNFSIS 261
           + NL L        IN NN++  T + K  N    H NN   N+ + NT SY++ N + +
Sbjct: 463 YMNLKLFDGQLNGQINENNLNDLTNLLKSKNKAPFHINNSANNNISSNTNSYISSNDNFN 522

Query: 262 IPVTRFICNH 291
           IP + FI ++
Sbjct: 523 IPSSYFIYDY 532


>UniRef50_Q7RGH3 Cluster: Expressed protein; n=2; Plasmodium
            (Vinckeia)|Rep: Expressed protein - Plasmodium yoelii
            yoelii
          Length = 1097

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 172  IYKMSNHFNNYLYNDQT-DNTSYLNLNFSISIPVTRFICNHIGEFIICN 315
            +YK++    +Y YN +  DNT       ++S+PV  F+CNH   +   N
Sbjct: 991  LYKLNKKKYSYKYNFRIIDNTYCYICKETLSLPVIHFMCNHSYHYYCLN 1039


>UniRef50_Q8M355 Cluster: Mitochondrial ribosomal protein VAR1; n=1;
           Saccharomyces castellii|Rep: Mitochondrial ribosomal
           protein VAR1 - Saccharomyces castellii (Yeast)
          Length = 326

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 115 LQFYFYKYIN*NNVSS---FT*IYKMSNHFNN----YLYNDQTDNTSYLNLNFSISIPVT 273
           L   FY YIN NN+++      +YK+ N  NN    Y+ N     + Y+N N +I +   
Sbjct: 120 LNIKFYYYINNNNMNTNYYMNMLYKLMNTLNNNNNMYMNNMNNIMSMYINKNINIEMIKL 179

Query: 274 RFICNH 291
            ++ N+
Sbjct: 180 NYVYNN 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,410,372
Number of Sequences: 1657284
Number of extensions: 8203680
Number of successful extensions: 19625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19593
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)