Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0174
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        28   1.0  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   1.8  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    27   1.8  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   5.6  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   5.6  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    25   7.4  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   9.7  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   9.7  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.7  

>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 212 HPSYSV*RRLVSLCTPRTDRRDQTPLSYCPSRIETSEVSQCCR 84
           HP   V        T R D  + T L  CP RI  +E  + C+
Sbjct: 186 HPDVGVELVRAGADTLRKDSENHTALEVCPDRIVCNEFLEACK 228


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 352 YLTLANSQTVPEPKTTEGETTYLQGSAGVVPTGAIGQ 242
           +L  + SQ +P P TT+  T  L     ++P  +I +
Sbjct: 504 HLLASKSQGLPSPATTDSNTHMLPSQGSLLPPSSISE 540


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 554 LFSENV-VLFVFSIINFPDIYWRIIILFFLIEATTA 450
           +F+ +V V+ V  I   P  YW ++IL FL++A  A
Sbjct: 295 IFAYSVGVVIVSHITESPFPYWNVLILPFLVDAVDA 330


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 548 SENVVLFVFSIINFPDIYWRIIILFFLIEATTALKTQQE 432
           S +V L + + +   +IYW I+IL     A T   T  E
Sbjct: 326 SRDVTLILLTALQLVNIYWLILILRIGYRAFTTNDTHDE 364


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 86  DSTGKLQKFLFSKDNMKAAFDLDGLYAECK 175
           D   +L+K++  ++N     DLD +YAEC+
Sbjct: 4   DLLSRLKKYIHDEENS----DLDSIYAECE 29


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 80  QPDSTGKLQKFLFSKDNMKAAFDLDGLYAE-CKEKLASFRQNKK 208
           QP ++    +   S+DNMKA+F     Y E  K+K + +R+ ++
Sbjct: 26  QPKNSSNTNEESSSQDNMKASFGSSKRYDERQKKKRSEYRRLRR 69


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 TRRNHTRRPLKICGFSFCSFWLRH 325
           TR  H R   ++ G  F +FWL H
Sbjct: 118 TRTMHVRCRYRLLGVGFDNFWLVH 141


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 83  PDSTGKLQKFLFSKDNMKAAFDLD 154
           PD TG+L+       NMK A D+D
Sbjct: 392 PDPTGRLEILRIHTKNMKLADDVD 415


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 317 AKNYRRRNHISSRVCGCGSYG 255
           A+ +R RNH +  +CG   YG
Sbjct: 253 ARYHRARNHNTLYICGTDEYG 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,754
Number of Sequences: 5004
Number of extensions: 48009
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)