Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0174
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0683 + 24260627-24260759,24262408-24262610                       29   3.3  
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    28   7.6  
01_03_0241 - 14111286-14111935,14111992-14112115                       28   7.6  

>01_05_0683 + 24260627-24260759,24262408-24262610
          Length = 111

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 260 YGCNWAVIRPA---LWRSTHPSYSV*RRLVSLCTPRTDRRDQTPLS 132
           +G NW  IR A   +  S+HP Y++ R   S  T R +  D  P+S
Sbjct: 33  WGTNWLRIRHAAASVLPSSHPDYTIDRASASFVTRRLNDWDWGPVS 78


>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 310 TTEGETTYLQGSAGVVPTGAIG 245
           TT   ++YLQG  GV+P G  G
Sbjct: 478 TTAQPSSYLQGGGGVLPAGGYG 499


>01_03_0241 - 14111286-14111935,14111992-14112115
          Length = 257

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 10  GXDESAAAHGD---GHERGPGEDEETAARQHWETSE 108
           G +++AAA      G E+G G +E TAAR  W + +
Sbjct: 144 GREKTAAARARWRRGGEKGRGGEEATAARARWSSGK 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,956
Number of Sequences: 37544
Number of extensions: 292909
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)