Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0174
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-7|AAA62566.1|  265|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U21324-7|AAA62566.1|  265|Caenorhabditis elegans Hypothetical
           protein C35D10.10 protein.
          Length = 265

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = +2

Query: 14  PTSRQLPTVMVMSEGREKMRRPQPDSTGKLQKFLFSKDNMKAAFDLDGLYAECKEKLASF 193
           P SRQLPT+ V  + +E  RRP  + + +   F+FS++N   AFDL  LY E KEK  + 
Sbjct: 201 PMSRQLPTICVFKDAKEIARRPLVNDSRRAVPFVFSEENCVLAFDLLNLYNEQKEKKGA- 259

Query: 194 RQNKKD 211
           +  K+D
Sbjct: 260 KAKKED 265


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +2

Query: 125 DNMKAAFDLDGLYAECKEKLASFRQNKKDE*TATAQVLLLPNCTRRNHTRRPLKICGFSF 304
           D +    D D  Y+E K+++   R  K +  T   + L + N  +  ++ +PL   G ++
Sbjct: 58  DGLSCRVDTDVQYSEEKKEITKKRTRKLETSTFPIRKLTIENKKKITNSPKPLAFKGSNY 117

Query: 305 CSFWLR 322
             F ++
Sbjct: 118 AEFAIK 123


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 272 GCGSYGCNWAVIRPALWRSTHPSYSV*RRLVSLCTPRTDRRDQTPLSYCPSRIETSEVSQ 93
           GC   G N+  +        H + S    LV L  P ++ +  +    CP+  E ++ S 
Sbjct: 398 GCSGNGNNFETVDQCQNFCLHSADSACDGLVPLKNPNSELQRCSEEDPCPAGYECNDSSY 457

Query: 92  CC 87
           CC
Sbjct: 458 CC 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,506
Number of Sequences: 27780
Number of extensions: 273074
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)