Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0164
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    30   0.34 
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   9.8  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +3

Query: 93  YEFKNYAMVKYREYTKKINSVCGLXFILYLAVENSAPGSLGFYVXVTATNVFETDVLSEV 272
           Y+F     + Y        ++C L +I    V +  P + GF+V     +VF   +L   
Sbjct: 457 YKFPGSVYLSYYGVLINFLALCALVYISIFPVTHEKPSAYGFFVSFLGPSVFIAYLLISP 516

Query: 273 IAKNELTQYNKPIXIIYESYKL*N 344
           I      Q  K + +    Y L N
Sbjct: 517 IFVKPTFQSLKDVDLTTGRYDLVN 540


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 540 LSERKQKYRRILRAQSV 490
           L++ KQK RRIL AQS+
Sbjct: 186 LTQIKQKIRRILEAQSI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,557
Number of Sequences: 5004
Number of extensions: 45870
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)